Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 HAUS6P2-201ENST00000433254 2404 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RNU6-137P-201ENST00000363680 108 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RN7SKP113-201ENST00000363891 295 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RNU6-541P-201ENST00000384709 110 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.590-201ENST00000410140 107 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 SNORD12B-201ENST00000410433 91 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 AC068287.1-201ENST00000430283 295 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 AC011742.1-201ENST00000431448 434 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 CYCSP32-201ENST00000440548 321 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RPL23AP65-201ENST00000475608 468 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RPL30P1-201ENST00000488676 339 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RPL7P47-201ENST00000497299 556 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.679-201ENST00000516416 91 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 AP006289.1-201ENST00000538089 277 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 LINC00933-203ENST00000559812 219 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 MIR4737-201ENST00000583979 81 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 MIR6758-201ENST00000620653 63 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 AL031595.2-201ENST00000624215 19071 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 Z73965.1-201ENST00000623412 2297 ntBASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIMD1Q9UGP4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 RNU6-740P-201ENST00000364734 105 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 RNU2-61P-201ENST00000411069 191 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC140172.1-201ENST00000502928 141 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 RN7SKP49-201ENST00000516675 260 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 RN7SKP260-201ENST00000516907 149 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC083809.1-201ENST00000615051 472 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 MIR6133-201ENST00000617057 108 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AP001029.2-203ENST00000589795 4910 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 AC139713.2-214ENST00000642059 1811 ntBASIC5.44□□□□□ -1.54
LIMD1Q9UGP4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 U3.3-201ENST00000362986 216 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.275-201ENST00000364726 110 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 MIR613-201ENST00000385248 95 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 MIR1182-201ENST00000408363 97 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RNA5SP44-201ENST00000410446 133 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC096638.1-201ENST00000444678 216 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC007395.1-201ENST00000451333 677 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC073901.1-201ENST00000462471 408 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC087477.1-201ENST00000465747 340 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AP000870.1-201ENST00000472927 406 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RN7SL244P-201ENST00000493405 297 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RNU7-110P-201ENST00000516891 62 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RNU6-1198P-201ENST00000516904 67 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 RNU6-703P-201ENST00000516946 107 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC122688.1-201ENST00000541494 223 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 MIR4423-201ENST00000580922 80 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC024581.2-201ENST00000619986 252 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 U6.106-201ENST00000636360 105 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 AC083843.3-201ENST00000623679 2186 ntBASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIMD1Q9UGP4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms