Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 AL049641.1-201ENST00000441055 1948 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC073343.1-201ENST00000328239 651 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 U8.3-201ENST00000363321 132 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 RNU4-1-201ENST00000363925 141 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 AL138827.1-201ENST00000402666 306 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 MTCO3P5-201ENST00000433620 714 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 GAPDHP17-201ENST00000449858 1001 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 TPT1P7-201ENST00000458300 517 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 RPL37P6-201ENST00000460682 294 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 RPL30P14-201ENST00000482744 348 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 AP003072.2-201ENST00000527756 676 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 HPRT1P3-201ENST00000539521 576 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 TRAV28-201ENST00000557548 323 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 MIR4528-201ENST00000577763 90 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC138761.3-201ENST00000579993 334 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC068790.2-201ENST00000602601 557 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC013553.2-201ENST00000604244 589 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 ATP1B3P1-201ENST00000605365 821 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 AC008962.1-201ENST00000605729 304 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 MIR7106-201ENST00000612419 65 ntBASIC3.49□□□□□ -1.85
USP44Q9H0E7 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP44Q9H0E7 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
USP44Q9H0E7 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP44Q9H0E7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 RNU1-39P-201ENST00000383897 165 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 RNU6-1042P-201ENST00000384204 107 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 MIR181B1-201ENST00000385240 110 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AL360182.1-201ENST00000397433 468 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 RNU2-33P-201ENST00000410344 192 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 RNU6-1077P-201ENST00000410506 102 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AL663109.1-201ENST00000411498 844 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 ELOCP4-201ENST00000420090 333 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 USP9YP36-201ENST00000424581 829 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 USP9YP14-201ENST00000430663 563 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 HMGB1P27-201ENST00000431429 603 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 ARPC3P1-201ENST00000437218 533 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AL513043.1-201ENST00000439124 535 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 Z82210.1-201ENST00000440037 231 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 GAPDHP27-201ENST00000447427 1020 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC108938.1-201ENST00000451204 136 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.48□□□□□ -1.85
USP44Q9H0E7 AL160314.1-201ENST00000490836 438 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC117522.3-201ENST00000507974 584 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC114797.1-201ENST00000514003 728 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.48□□□□□ -1.85
USP44Q9H0E7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.48□□□□□ -1.85
USP44Q9H0E7 HMGB1P6-201ENST00000569046 646 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC005951.2-201ENST00000576282 495 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 MIR3609-201ENST00000582661 80 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC079089.3-201ENST00000603094 673 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.48□□□□□ -1.85
USP44Q9H0E7 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 AC007256.1-201ENST00000392253 2765 ntBASIC3.48□□□□□ -1.85
USP44Q9H0E7 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP44Q9H0E7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP44Q9H0E7 RNU5E-6P-201ENST00000365574 115 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 U3.26-201ENST00000391236 204 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 RPS3AP36-201ENST00000398190 775 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 PIGFP2-201ENST00000421400 651 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC092047.1-201ENST00000424997 240 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC112220.1-201ENST00000434628 355 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 PIGFP3-201ENST00000441918 722 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC244505.5-201ENST00000443639 207 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC090525.1-201ENST00000479116 478 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC012181.1-201ENST00000479895 423 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP44Q9H0E7 SNORA31.1-201ENST00000515993 133 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 SNORA31.3-201ENST00000516029 96 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 SNORA31.5-201ENST00000516190 133 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 RNU1-103P-201ENST00000516502 125 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 SNORA18.6-201ENST00000516792 115 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC087883.1-201ENST00000551882 391 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 MTND1P15-201ENST00000579262 949 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC087683.1-201ENST00000591187 441 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC006566.1-201ENST00000608943 513 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC034102.8-201ENST00000615146 484 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC007998.5-201ENST00000622938 237 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 MTND1P37-201ENST00000636562 264 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms