Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.43□□□□□ -2.18
SCAPERQ9BY12 OR6C72P-201ENST00000451403 892 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC021146.2-201ENST00000504736 556 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.43□□□□□ -2.18
SCAPERQ9BY12 MIR4698-201ENST00000577795 80 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC073111.2-201ENST00000605657 1075 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 SDAD1P2-201ENST00000441308 2028 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SCAPERQ9BY12 AC018630.2-201ENST00000534866 2403 ntBASIC1.43□□□□□ -2.18
SCAPERQ9BY12 RNA5SP258-201ENST00000362750 119 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 U3.29-201ENST00000391296 212 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 RPL21P90-201ENST00000415692 466 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 RPS29P28-201ENST00000446439 141 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC092989.1-201ENST00000481235 277 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 PRELID3BP4-201ENST00000515476 571 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 RNU7-193P-201ENST00000516723 65 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AP005137.2-201ENST00000609238 400 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC108706.1-201ENST00000611053 297 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC079395.3-201ENST00000615161 484 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 U6.48-201ENST00000618523 106 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 AC097372.4-201ENST00000625025 466 ntBASIC1.42□□□□□ -2.18
SCAPERQ9BY12 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.42□□□□□ -2.18
SCAPERQ9BY12 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SCAPERQ9BY12 CBX3P6-201ENST00000430257 527 ntBASIC1.41□□□□□ -2.18
SCAPERQ9BY12 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.41□□□□□ -2.18
SCAPERQ9BY12 AC004022.1-201ENST00000447766 1066 ntBASIC1.41□□□□□ -2.18
SCAPERQ9BY12 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.41□□□□□ -2.18
SCAPERQ9BY12 AL669831.4-202ENST00000590817 238 ntBASIC1.41□□□□□ -2.18
SCAPERQ9BY12 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.41□□□□□ -2.18
SCAPERQ9BY12 AC123912.3-201ENST00000600907 1367 ntBASIC1.41□□□□□ -2.18
SCAPERQ9BY12 RNU6-198P-201ENST00000384258 104 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 RNU6-19P-201ENST00000384718 107 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 RNU11-5P-201ENST00000391216 129 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 AC006548.1-201ENST00000427470 102 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.4□□□□□ -2.18
SCAPERQ9BY12 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.4□□□□□ -2.18
SCAPERQ9BY12 EIF4EP5-201ENST00000528228 640 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 RRN3P3-201ENST00000549207 578 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC1.4□□□□□ -2.18
SCAPERQ9BY12 AC103810.9-201ENST00000606688 112 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 CR381572.1-201ENST00000625098 102 ntBASIC1.4□□□□□ -2.18
SCAPERQ9BY12 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 MIR126-201ENST00000362291 85 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 RNU6-1249P-201ENST00000363237 111 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 SNORD14B-201ENST00000364533 90 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 MIR493-201ENST00000385254 89 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 VN1R36P-201ENST00000414936 291 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 SEPT2P1-201ENST00000419651 180 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC092648.1-201ENST00000425870 423 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC008850.1-201ENST00000427546 362 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 RPL7L1P10-201ENST00000427790 463 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 EZH2P1-201ENST00000431167 291 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 NDUFA5P10-201ENST00000432147 357 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 BX248409.1-201ENST00000455497 255 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 PCNAP1-201ENST00000505363 709 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.4□□□□□ -2.19
SCAPERQ9BY12 DEFB108E-201ENST00000524692 240 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC012254.4-201ENST00000588843 273 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 AC005021.1-201ENST00000608730 355 ntBASIC1.4□□□□□ -2.19
SCAPERQ9BY12 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 RNU6-374P-201ENST00000364146 108 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 Y_RNA.493-201ENST00000384422 102 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 MRPL35P3-201ENST00000421557 364 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 RPS15AP27-201ENST00000449183 343 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC087884.1-201ENST00000469738 328 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC074029.2-201ENST00000551045 634 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.39□□□□□ -2.19
SCAPERQ9BY12 PRR13P7-201ENST00000605538 430 ntBASIC1.39□□□□□ -2.19
SCAPERQ9BY12 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 HMGB3P31-201ENST00000413333 595 ntBASIC1.38□□□□□ -2.19
SCAPERQ9BY12 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 RPL30P4-201ENST00000429309 333 ntBASIC1.38□□□□□ -2.19
SCAPERQ9BY12 NEFMP1-201ENST00000443423 1006 ntBASIC1.38□□□□□ -2.19
SCAPERQ9BY12 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.38□□□□□ -2.19
SCAPERQ9BY12 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms