Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SAR1AP2-201ENST00000392696 594 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 FAT1P1-201ENST00000406588 507 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RNU2-33P-201ENST00000410344 192 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC016907.1-201ENST00000419483 435 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RAC1P6-201ENST00000423911 575 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 OR2AS1P-201ENST00000427827 319 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL590664.1-201ENST00000448065 339 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC125238.1-201ENST00000448842 249 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC114797.1-201ENST00000514003 728 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC091826.1-201ENST00000514065 313 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RN7SKP298-201ENST00000515950 94 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RNA5SP356-201ENST00000515972 94 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC022616.3-201ENST00000523940 148 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AP006587.4-201ENST00000526053 529 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 ARL2BPP2-201ENST00000550907 489 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 GTF3AP2-201ENST00000557014 266 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 TRAV28-201ENST00000557548 323 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 MTCO3P24-201ENST00000572729 782 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC103987.3-201ENST00000582071 292 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 MIR4672-201ENST00000583126 81 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC087683.1-201ENST00000591187 441 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC068790.2-201ENST00000602601 557 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL161729.4-201ENST00000604650 476 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 NDUFA8P1-201ENST00000605525 367 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AL589743.7-201ENST00000612637 233 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC034102.8-201ENST00000615146 484 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC002076.2-201ENST00000617362 122 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 AC027309.3-201ENST00000623419 351 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 MTND1P37-201ENST00000636562 264 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AL049641.1-201ENST00000441055 1948 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 SNORD56.2-201ENST00000363242 71 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNY1P12-201ENST00000364251 105 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 SNORA20.2-201ENST00000383922 131 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 Y_RNA.582-201ENST00000391023 95 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RPS4XP3-201ENST00000398541 413 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AL354719.1-201ENST00000406535 843 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNA5SP274-201ENST00000410484 108 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU2-16P-201ENST00000410712 136 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC127391.1-201ENST00000411737 98 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 HSPE1P1-201ENST00000421494 318 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 MED13P1-201ENST00000428342 171 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RPL21P40-201ENST00000428586 483 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC104850.1-201ENST00000435940 476 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RPL23AP22-201ENST00000437556 453 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 BNIP3P2-201ENST00000441221 577 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 TPTE2P5-203ENST00000458118 728 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-420P-201ENST00000458780 107 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNA5SP310-201ENST00000459084 116 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RPS27P29-201ENST00000463110 252 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC117440.1-201ENST00000474107 571 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC083906.5-201ENST00000503722 328 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-390P-201ENST00000516259 103 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU1-143P-201ENST00000516296 146 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-1256P-201ENST00000516539 103 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU7-51P-201ENST00000516560 62 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-405P-201ENST00000516637 110 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-1092P-201ENST00000516955 87 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU6-711P-201ENST00000517255 106 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 CASP1P1-201ENST00000526345 212 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AC010546.1-201ENST00000569391 485 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 U1.23-201ENST00000610293 146 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 AL133173.2-201ENST00000614270 90 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 RNU1-68P-201ENST00000615382 146 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 U1.39-201ENST00000621562 146 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 MTND5P27-201ENST00000428871 1720 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 GABRG2-229ENST00000641017 3628 ntBASIC2.92□□□□□ -1.94
CCDC3Q9BQI4 API5P2-201ENST00000397055 1498 ntBASIC2.91□□□□□ -1.94
CCDC3Q9BQI4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms