Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC018555.1-201ENST00000567548 1980 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC103710.2-202ENST00000641454 2853 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 MIR449A-201ENST00000362113 91 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC018630.2-202ENST00000422992 927 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 RPL21P112-201ENST00000434403 463 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 RPL7P12-201ENST00000446719 750 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC020550.1-201ENST00000447385 163 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AL118520.1-201ENST00000450770 291 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 HSPE1P6-201ENST00000479457 291 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 RPL21P99-201ENST00000480369 423 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 HMGB1P22-201ENST00000505315 124 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 RNA5SP341-201ENST00000516261 117 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 RNU6-677P-201ENST00000516914 101 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 IGKV2D-23-201ENST00000518179 286 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 MTND4P7-201ENST00000523876 130 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AP006587.4-201ENST00000526053 529 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC007424.1-203ENST00000554613 687 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AL355836.1-201ENST00000555951 870 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC020914.4-201ENST00000597690 277 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 AC104763.2-201ENST00000604179 382 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 MAPK10-253ENST00000641010 4072 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 MFSD8-236ENST00000641509 4050 ntBASIC4.41□□□□□ -1.7
SMC1BQ8NDV3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SMC1BQ8NDV3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SMC1BQ8NDV3 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
SMC1BQ8NDV3 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SMC1BQ8NDV3 AC118273.1-201ENST00000525324 3006 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RNU4-35P-201ENST00000362588 141 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 SNORA7.2-201ENST00000364446 145 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RNU6-190P-201ENST00000384154 102 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 SNORA36C-201ENST00000384289 132 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 MIR514A2-201ENST00000385131 88 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 MIR514A3-201ENST00000385132 88 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RNU4-26P-201ENST00000410270 107 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 ARL5AP1-201ENST00000418991 388 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 HMGB1P27-201ENST00000431429 603 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AL645939.1-201ENST00000453429 797 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RPL23AP31-201ENST00000456160 467 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RNU6-953P-201ENST00000459154 107 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 TRBV1-201ENST00000476502 284 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 MTND3P22-201ENST00000510932 243 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 RN7SKP258-201ENST00000517151 304 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 SNRPGP16-201ENST00000533275 226 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC243972.3-201ENST00000539655 198 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC005261.5-201ENST00000596280 355 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AL365204.3-201ENST00000612448 685 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 uc_338.34-201ENST00000617467 174 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AP001350.1-201ENST00000601906 1524 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 AC093908.1-201ENST00000623125 8092 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 MTND4P29-201ENST00000503122 1372 ntBASIC4.4□□□□□ -1.71
SMC1BQ8NDV3 TPTE2P4-201ENST00000258589 1605 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 AL157700.1-201ENST00000561973 1432 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 DEFB108F-201ENST00000344638 222 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 RNU6-845P-201ENST00000362578 103 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 Y_RNA.263-201ENST00000364659 114 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 RNA5SP239-201ENST00000410218 129 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 RPL30P2-201ENST00000414021 291 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 TOMM22P1-201ENST00000418578 312 ntBASIC4.39□□□□□ -1.71
SMC1BQ8NDV3 RPL7P46-201ENST00000425129 740 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms