Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.59□□□□□ -1.67
SF3A1Q15459 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
SF3A1Q15459 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
SF3A1Q15459 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 Y_RNA.72-201ENST00000362894 103 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 SNORD3E-201ENST00000362899 217 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 RNU6-1303P-201ENST00000364841 107 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 RNU6-658P-201ENST00000384606 106 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 HSPE1P1-201ENST00000421494 318 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.59□□□□□ -1.67
SF3A1Q15459 NEK4P1-201ENST00000433383 879 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.59□□□□□ -1.67
SF3A1Q15459 RPL37P4-201ENST00000448908 268 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 IPO8P1-201ENST00000455509 3109 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AP002812.1-201ENST00000495378 474 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 MTCO2P30-201ENST00000503662 364 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AC010486.1-201ENST00000511793 424 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.59□□□□□ -1.67
SF3A1Q15459 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.59□□□□□ -1.67
SF3A1Q15459 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.59□□□□□ -1.67
SF3A1Q15459 H3F3AP1-201ENST00000559984 334 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SF3A1Q15459 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.59□□□□□ -1.67
SF3A1Q15459 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.59□□□□□ -1.67
SF3A1Q15459 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.59□□□□□ -1.67
SF3A1Q15459 AL355598.1-201ENST00000604169 202 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AC110741.2-201ENST00000605278 268 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 AL136221.1-201ENST00000621449 509 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SF3A1Q15459 AL008636.1-201ENST00000625038 1018 ntBASIC4.59□□□□□ -1.67
SF3A1Q15459 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.59□□□□□ -1.67
SF3A1Q15459 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SF3A1Q15459 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SF3A1Q15459 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
SF3A1Q15459 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SF3A1Q15459 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SF3A1Q15459 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SF3A1Q15459 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SF3A1Q15459 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.58□□□□□ -1.68
SF3A1Q15459 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SF3A1Q15459 MIR412-201ENST00000362142 91 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 RNU6-270P-201ENST00000364131 105 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 Y_RNA.399-201ENST00000383955 105 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 SNORA75B-201ENST00000384053 137 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 RPL32P23-201ENST00000397237 405 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AC108032.1-201ENST00000416706 207 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AL645937.1-202ENST00000421799 937 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AC073063.1-201ENST00000434352 607 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AC098614.3-201ENST00000438957 440 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 RPL7P12-201ENST00000446719 750 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AL583843.1-201ENST00000456070 346 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AC091153.1-201ENST00000466297 402 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.58□□□□□ -1.68
SF3A1Q15459 MTCO1P35-201ENST00000515270 228 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 RNU6-1314P-201ENST00000517139 104 ntBASIC4.58□□□□□ -1.68
SF3A1Q15459 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.58□□□□□ -1.68
SF3A1Q15459 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.58□□□□□ -1.68
SF3A1Q15459 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.58□□□□□ -1.68
SF3A1Q15459 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SF3A1Q15459 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.58□□□□□ -1.68
SF3A1Q15459 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.57□□□□□ -1.68
SF3A1Q15459 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.57□□□□□ -1.68
SF3A1Q15459 FRG1CP-201ENST00000358464 769 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 Y_RNA.100-201ENST00000363141 102 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 Y_RNA.604-201ENST00000410574 102 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.57□□□□□ -1.68
SF3A1Q15459 RPL21P109-201ENST00000422213 475 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 AC098614.2-201ENST00000426040 255 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 AC017083.1-201ENST00000428093 483 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.57□□□□□ -1.68
SF3A1Q15459 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.57□□□□□ -1.68
SF3A1Q15459 NUTF2P3-201ENST00000448540 384 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 RPL26P9-201ENST00000457466 433 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 PMCHL2-203ENST00000457791 237 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 SLC25A15P5-201ENST00000508033 253 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 RNU1-103P-201ENST00000516502 125 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.57□□□□□ -1.68
SF3A1Q15459 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 TRAV37-201ENST00000553906 342 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 AC007938.3-201ENST00000604965 623 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 MTND4LP5-201ENST00000605152 292 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 MIR6868-201ENST00000611215 58 ntBASIC4.57□□□□□ -1.68
SF3A1Q15459 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
SF3A1Q15459 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SF3A1Q15459 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.57□□□□□ -1.68
SF3A1Q15459 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms