Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIG3P49916 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.7□□□□□ -1.66
LIG3P49916 AL136164.3-201ENST00000624429 3978 ntBASIC4.7□□□□□ -1.66
LIG3P49916 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.7□□□□□ -1.66
LIG3P49916 A2MP1-204ENST00000566278 4130 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.69□□□□□ -1.66
LIG3P49916 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.69□□□□□ -1.66
LIG3P49916 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LIG3P49916 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LIG3P49916 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG3P49916 Y_RNA.389-201ENST00000383924 113 ntBASIC4.69□□□□□ -1.66
LIG3P49916 RNU2-23P-201ENST00000410545 195 ntBASIC4.69□□□□□ -1.66
LIG3P49916 Y_RNA.625-201ENST00000411256 107 ntBASIC4.69□□□□□ -1.66
LIG3P49916 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.69□□□□□ -1.66
LIG3P49916 EI24P1-201ENST00000416584 867 ntBASIC4.69□□□□□ -1.66
LIG3P49916 TOMM22P1-201ENST00000418578 312 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC006463.2-201ENST00000473326 348 ntBASIC4.69□□□□□ -1.66
LIG3P49916 RN7SL459P-201ENST00000481078 302 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AL160314.1-201ENST00000490836 438 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG3P49916 AC006499.6-201ENST00000511169 607 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG3P49916 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG3P49916 ACA59.1-201ENST00000515966 143 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC007991.1-201ENST00000522680 631 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AL161670.1-201ENST00000554348 137 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC110588.1-201ENST00000559699 137 ntBASIC4.69□□□□□ -1.66
LIG3P49916 CYP4A43P-201ENST00000568156 121 ntBASIC4.69□□□□□ -1.66
LIG3P49916 AC104695.3-201ENST00000604052 296 ntBASIC4.69□□□□□ -1.66
LIG3P49916 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG3P49916 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.69□□□□□ -1.66
LIG3P49916 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.69□□□□□ -1.66
LIG3P49916 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIG3P49916 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG3P49916 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG3P49916 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG3P49916 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIG3P49916 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG3P49916 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
LIG3P49916 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
LIG3P49916 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 MIR412-201ENST00000362142 91 ntBASIC4.68□□□□□ -1.66
LIG3P49916 RNA5SP443-201ENST00000363083 132 ntBASIC4.68□□□□□ -1.66
LIG3P49916 Y_RNA.193-201ENST00000363979 102 ntBASIC4.68□□□□□ -1.66
LIG3P49916 SNORA70F-201ENST00000384142 135 ntBASIC4.68□□□□□ -1.66
LIG3P49916 Y_RNA.645-201ENST00000391229 102 ntBASIC4.68□□□□□ -1.66
LIG3P49916 RNU6-101P-201ENST00000410323 104 ntBASIC4.68□□□□□ -1.66
LIG3P49916 RNU6-174P-201ENST00000410406 106 ntBASIC4.68□□□□□ -1.66
LIG3P49916 RNU6-325P-201ENST00000411132 105 ntBASIC4.68□□□□□ -1.66
LIG3P49916 DPH3P2-201ENST00000422618 250 ntBASIC4.68□□□□□ -1.66
LIG3P49916 NDUFB4P7-201ENST00000423198 363 ntBASIC4.68□□□□□ -1.66
LIG3P49916 HMGB1P12-201ENST00000438594 598 ntBASIC4.68□□□□□ -1.66
LIG3P49916 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.68□□□□□ -1.66
LIG3P49916 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.68□□□□□ -1.66
LIG3P49916 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.68□□□□□ -1.66
LIG3P49916 AC113155.1-201ENST00000511141 769 ntBASIC4.68□□□□□ -1.66
LIG3P49916 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.68□□□□□ -1.66
LIG3P49916 AC105129.1-201ENST00000560250 297 ntBASIC4.68□□□□□ -1.66
LIG3P49916 MIR3668-201ENST00000582138 75 ntBASIC4.68□□□□□ -1.66
LIG3P49916 VN1R107P-201ENST00000601784 209 ntBASIC4.68□□□□□ -1.66
LIG3P49916 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.68□□□□□ -1.66
LIG3P49916 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
LIG3P49916 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
LIG3P49916 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
LIG3P49916 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG3P49916 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIG3P49916 AC139713.2-214ENST00000642059 1811 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AL136964.1-201ENST00000622038 2990 ntBASIC4.67□□□□□ -1.66
LIG3P49916 Y_RNA.153-201ENST00000363615 91 ntBASIC4.67□□□□□ -1.66
LIG3P49916 SNORD113.2-201ENST00000364166 89 ntBASIC4.67□□□□□ -1.66
LIG3P49916 Y_RNA.245-201ENST00000364493 95 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RNU6-702P-201ENST00000364982 107 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RNU6-505P-201ENST00000384427 107 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RNA5SP332-201ENST00000391063 115 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RPL23AP48-201ENST00000406913 488 ntBASIC4.67□□□□□ -1.66
LIG3P49916 Y_RNA.618-201ENST00000410949 107 ntBASIC4.67□□□□□ -1.66
LIG3P49916 Z85995.1-201ENST00000415547 335 ntBASIC4.67□□□□□ -1.66
LIG3P49916 MRPS18CP6-201ENST00000423587 223 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.67□□□□□ -1.66
LIG3P49916 FABP5P15-201ENST00000453566 214 ntBASIC4.67□□□□□ -1.66
LIG3P49916 snoU13.4-201ENST00000458916 104 ntBASIC4.67□□□□□ -1.66
LIG3P49916 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.67□□□□□ -1.66
LIG3P49916 RPL17P19-201ENST00000489069 552 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RPL36AP41-201ENST00000493820 306 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AC110794.1-201ENST00000505816 425 ntBASIC4.67□□□□□ -1.66
LIG3P49916 HMGN1P11-201ENST00000508668 303 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AC015795.1-201ENST00000513669 327 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RNU6-635P-201ENST00000516651 102 ntBASIC4.67□□□□□ -1.66
LIG3P49916 RN7SKP92-201ENST00000517266 244 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AC008745.1-201ENST00000604064 271 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AC123912.5-201ENST00000605470 343 ntBASIC4.67□□□□□ -1.66
LIG3P49916 AL355810.1-201ENST00000614629 552 ntBASIC4.67□□□□□ -1.66
LIG3P49916 MIR4727-201ENST00000622232 55 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms