Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNORA18.3-201ENST00000384122 132 ntBASIC3.55□□□□□ -1.84
CTCFP49711 Y_RNA.466-201ENST00000384294 113 ntBASIC3.55□□□□□ -1.84
CTCFP49711 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CTCFP49711 RNU6-278P-201ENST00000390945 109 ntBASIC3.55□□□□□ -1.84
CTCFP49711 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CTCFP49711 TXNP7-201ENST00000406296 293 ntBASIC3.55□□□□□ -1.84
CTCFP49711 FAT1P1-201ENST00000406588 507 ntBASIC3.55□□□□□ -1.84
CTCFP49711 RNA5SP31-201ENST00000411144 127 ntBASIC3.55□□□□□ -1.84
CTCFP49711 ELOCP17-201ENST00000414751 326 ntBASIC3.55□□□□□ -1.84
CTCFP49711 CDK8P2-201ENST00000415020 547 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.55□□□□□ -1.84
CTCFP49711 AC009961.2-201ENST00000435771 251 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.55□□□□□ -1.84
CTCFP49711 AL590664.1-201ENST00000448065 339 ntBASIC3.55□□□□□ -1.84
CTCFP49711 GAPDHP17-201ENST00000449858 1001 ntBASIC3.55□□□□□ -1.84
CTCFP49711 RPL7P5-201ENST00000471472 736 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AC010631.1-201ENST00000474150 156 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AC021205.2-201ENST00000480069 347 ntBASIC3.55□□□□□ -1.84
CTCFP49711 CDC42P4-201ENST00000510507 563 ntBASIC3.55□□□□□ -1.84
CTCFP49711 RNU6-840P-201ENST00000517275 65 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AC107934.2-201ENST00000518653 310 ntBASIC3.55□□□□□ -1.84
CTCFP49711 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.55□□□□□ -1.84
CTCFP49711 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.55□□□□□ -1.84
CTCFP49711 AC090578.1-201ENST00000604955 591 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AP000860.1-201ENST00000605250 559 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AC103710.2-201ENST00000609912 942 ntBASIC3.55□□□□□ -1.84
CTCFP49711 uc_338.1-201ENST00000612113 180 ntBASIC3.55□□□□□ -1.84
CTCFP49711 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.55□□□□□ -1.84
CTCFP49711 AC100793.4-201ENST00000613683 429 ntBASIC3.55□□□□□ -1.84
CTCFP49711 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.55□□□□□ -1.84
CTCFP49711 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 AC008568.2-201ENST00000623862 2313 ntBASIC3.54□□□□□ -1.84
CTCFP49711 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 OR4G2P-202ENST00000641004 1759 ntBASIC3.54□□□□□ -1.84
CTCFP49711 Y_RNA.118-201ENST00000363300 101 ntBASIC3.54□□□□□ -1.84
CTCFP49711 Y_RNA.359-201ENST00000365498 102 ntBASIC3.54□□□□□ -1.84
CTCFP49711 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CTCFP49711 RNU6-851P-201ENST00000384565 107 ntBASIC3.54□□□□□ -1.84
CTCFP49711 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CTCFP49711 DEFB108C-201ENST00000400154 252 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AL359634.1-202ENST00000404721 284 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RPS15AP12-201ENST00000419498 388 ntBASIC3.54□□□□□ -1.84
CTCFP49711 NDUFB4P7-201ENST00000423198 363 ntBASIC3.54□□□□□ -1.84
CTCFP49711 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RPL23AP82-202ENST00000427528 469 ntBASIC3.54□□□□□ -1.84
CTCFP49711 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.54□□□□□ -1.84
CTCFP49711 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.54□□□□□ -1.84
CTCFP49711 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.54□□□□□ -1.84
CTCFP49711 AC244505.5-201ENST00000443639 207 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.54□□□□□ -1.84
CTCFP49711 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.54□□□□□ -1.84
CTCFP49711 AC008264.1-201ENST00000447612 367 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.54□□□□□ -1.84
CTCFP49711 AC091179.1-201ENST00000461606 579 ntBASIC3.54□□□□□ -1.84
CTCFP49711 CENPBD1P1-201ENST00000464061 469 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RPL23AP67-201ENST00000465341 474 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AL049714.1-201ENST00000466686 347 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RPL31P60-201ENST00000478450 367 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC010587.1-201ENST00000505809 469 ntBASIC3.54□□□□□ -1.84
CTCFP49711 NDUFB4P2-201ENST00000509515 391 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC114797.1-201ENST00000514003 728 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.54□□□□□ -1.84
CTCFP49711 RNA5SP337-201ENST00000517007 109 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AP001646.1-201ENST00000527936 915 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.54□□□□□ -1.84
CTCFP49711 CYCSP39-201ENST00000565821 309 ntBASIC3.54□□□□□ -1.84
CTCFP49711 MTCYBP33-201ENST00000575007 1130 ntBASIC3.54□□□□□ -1.84
CTCFP49711 MIR3611-201ENST00000584484 83 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC016727.1-205ENST00000605437 569 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC107294.3-201ENST00000609211 526 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC103710.1-201ENST00000610003 901 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC013476.2-201ENST00000614456 459 ntBASIC3.54□□□□□ -1.84
CTCFP49711 SDR42E1P2-201ENST00000614861 481 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC010133.1-201ENST00000615809 842 ntBASIC3.54□□□□□ -1.84
CTCFP49711 SNHG22-203ENST00000617833 660 ntBASIC3.54□□□□□ -1.84
CTCFP49711 AC006338.1-201ENST00000618453 749 ntBASIC3.54□□□□□ -1.84
CTCFP49711 SNORD39.4-201ENST00000620099 78 ntBASIC3.54□□□□□ -1.84
CTCFP49711 GABRG2-229ENST00000641017 3628 ntBASIC3.54□□□□□ -1.84
CTCFP49711 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.54□□□□□ -1.84
CTCFP49711 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CTCFP49711 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
CTCFP49711 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.53□□□□□ -1.84
CTCFP49711 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CTCFP49711 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CTCFP49711 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CTCFP49711 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
CTCFP49711 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.53□□□□□ -1.84
CTCFP49711 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
CTCFP49711 MIR148B-201ENST00000362252 99 ntBASIC3.53□□□□□ -1.84
CTCFP49711 RNU6-511P-201ENST00000363496 107 ntBASIC3.53□□□□□ -1.84
CTCFP49711 RNY4P34-201ENST00000364779 95 ntBASIC3.53□□□□□ -1.84
CTCFP49711 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.53□□□□□ -1.84
CTCFP49711 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
CTCFP49711 Y_RNA.436-201ENST00000384097 102 ntBASIC3.53□□□□□ -1.84
CTCFP49711 RPL23AP32-201ENST00000395315 459 ntBASIC3.53□□□□□ -1.84
CTCFP49711 MRPL42P2-201ENST00000403169 426 ntBASIC3.53□□□□□ -1.84
CTCFP49711 TMEM167AP1-201ENST00000423409 219 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms