Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RBM11P1-201ENST00000604951 799 ntBASIC3.43□□□□□ -1.86
PTPN9P43378 MIR92B-201ENST00000607575 96 ntBASIC3.43□□□□□ -1.86
PTPN9P43378 AC090132.2-201ENST00000615881 347 ntBASIC3.43□□□□□ -1.86
PTPN9P43378 MIR1321-201ENST00000637766 79 ntBASIC3.43□□□□□ -1.86
PTPN9P43378 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
PTPN9P43378 MTCO1P12-201ENST00000414273 1543 ntBASIC3.43□□□□□ -1.86
PTPN9P43378 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
PTPN9P43378 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN9P43378 AC103710.2-202ENST00000641454 2853 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 SNORA71.3-201ENST00000362582 128 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 RNU6-188P-201ENST00000364207 107 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 RNU4-12P-201ENST00000365233 139 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN9P43378 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN9P43378 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN9P43378 CST9LP2-201ENST00000437612 320 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN9P43378 NEFMP1-201ENST00000443423 1006 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN9P43378 PRDX3P3-201ENST00000447765 522 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 FDX1P2-201ENST00000450769 375 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 RPL21P10-201ENST00000463521 490 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 GMFBP1-201ENST00000467831 427 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 AC092185.1-201ENST00000491371 97 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN9P43378 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN9P43378 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.42□□□□□ -1.86
PTPN9P43378 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN9P43378 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.42□□□□□ -1.86
PTPN9P43378 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.42□□□□□ -1.86
PTPN9P43378 AK6P1-201ENST00000540219 478 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 AC093788.1-201ENST00000609356 927 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 AL157817.1-201ENST00000614264 790 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 AL110115.1-201ENST00000614396 364 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 AC034102.8-201ENST00000615146 484 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN9P43378 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
PTPN9P43378 MIR7975-201ENST00000619350 68 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN9P43378 MIR3688-2-201ENST00000636963 87 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.42□□□□□ -1.86
PTPN9P43378 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN9P43378 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN9P43378 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN9P43378 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN9P43378 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN9P43378 AL139276.1-201ENST00000311910 1001 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 Y_RNA.409-201ENST00000383990 98 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 RNU6-14P-201ENST00000384630 106 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 Y_RNA.573-201ENST00000384763 105 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 RNU6-1158P-201ENST00000391167 107 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
PTPN9P43378 BTF3P7-201ENST00000407097 488 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN9P43378 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN9P43378 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN9P43378 SDCBPP3-201ENST00000419629 891 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN9P43378 RPL7P54-201ENST00000438336 674 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 CBWD4P-201ENST00000445695 655 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AL358232.1-201ENST00000448030 501 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN9P43378 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN9P43378 RNU7-63P-201ENST00000459054 62 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 RNU6-953P-201ENST00000459154 107 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AL121769.1-201ENST00000469473 401 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 MTAPP1-201ENST00000489154 819 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 SLC25A15P5-201ENST00000508033 253 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN9P43378 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN9P43378 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN9P43378 HIGD1AP1-201ENST00000550979 275 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC011611.1-201ENST00000552179 197 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN9P43378 MIR4775-201ENST00000581168 75 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC006504.3-201ENST00000586818 523 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.41□□□□□ -1.86
PTPN9P43378 AL162413.1-201ENST00000603198 110 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC106900.2-201ENST00000604994 317 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC008536.2-201ENST00000607284 349 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC130324.3-201ENST00000614165 542 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AL589994.2-201ENST00000621124 579 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN9P43378 MTND5P42-201ENST00000637720 498 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN9P43378 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
PTPN9P43378 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.41□□□□□ -1.86
PTPN9P43378 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN9P43378 RNU6-61P-201ENST00000365528 109 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 RNU6-741P-201ENST00000383889 107 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 SNORA24.1-201ENST00000384401 135 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 RNU6-780P-201ENST00000391030 104 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 SNORA48.8-201ENST00000391324 134 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 MIR1277-201ENST00000408536 78 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 RNU2-9P-201ENST00000410194 145 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 Z85995.1-201ENST00000415547 335 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AL109913.1-201ENST00000421173 514 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN9P43378 CALM2P2-201ENST00000428512 440 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms