Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL160394.1-201ENST00000624765 724 ntBASIC3.09□□□□□ -1.91
MSH3P20585 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.09□□□□□ -1.91
MSH3P20585 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
MSH3P20585 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
MSH3P20585 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.09□□□□□ -1.92
MSH3P20585 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH3P20585 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSH3P20585 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH3P20585 Y_RNA.22-201ENST00000362492 102 ntBASIC3.08□□□□□ -1.92
MSH3P20585 RNA5SP387-201ENST00000364226 106 ntBASIC3.08□□□□□ -1.92
MSH3P20585 RNU5E-6P-201ENST00000365574 115 ntBASIC3.08□□□□□ -1.92
MSH3P20585 SNORA46-201ENST00000384762 135 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AL359634.1-202ENST00000404721 284 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AL591034.1-201ENST00000407447 340 ntBASIC3.08□□□□□ -1.92
MSH3P20585 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.08□□□□□ -1.92
MSH3P20585 SDCBPP3-201ENST00000419629 891 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 UBE2D3P2-201ENST00000424409 445 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 RPL7P46-201ENST00000425129 740 ntBASIC3.08□□□□□ -1.92
MSH3P20585 USP9YP18-201ENST00000425912 695 ntBASIC3.08□□□□□ -1.92
MSH3P20585 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH3P20585 RPL23AP30-201ENST00000432419 501 ntBASIC3.08□□□□□ -1.92
MSH3P20585 MTATP6P13-201ENST00000438531 667 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSH3P20585 AC003071.1-201ENST00000451219 789 ntBASIC3.08□□□□□ -1.92
MSH3P20585 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 ARL4AP2-201ENST00000507378 601 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC009646.1-201ENST00000510455 318 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.08□□□□□ -1.92
MSH3P20585 MED28P6-201ENST00000558776 231 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH3P20585 AC098848.2-201ENST00000588023 330 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH3P20585 AL133393.1-201ENST00000603277 287 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AP002360.4-201ENST00000606980 481 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AC068944.2-201ENST00000610373 403 ntBASIC3.08□□□□□ -1.92
MSH3P20585 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH3P20585 MIR3651-201ENST00000630427 90 ntBASIC3.08□□□□□ -1.92
MSH3P20585 MIR622-201ENST00000638396 96 ntBASIC3.08□□□□□ -1.92
MSH3P20585 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSH3P20585 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSH3P20585 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH3P20585 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 Y_RNA.333-201ENST00000365274 102 ntBASIC3.07□□□□□ -1.92
MSH3P20585 Y_RNA.372-201ENST00000365599 102 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RNU1-39P-201ENST00000383897 165 ntBASIC3.07□□□□□ -1.92
MSH3P20585 Y_RNA.409-201ENST00000383990 98 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RNU6-74P-201ENST00000384235 107 ntBASIC3.07□□□□□ -1.92
MSH3P20585 SNORA36C-201ENST00000384289 132 ntBASIC3.07□□□□□ -1.92
MSH3P20585 MIR558-201ENST00000384920 94 ntBASIC3.07□□□□□ -1.92
MSH3P20585 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
MSH3P20585 TXNP7-201ENST00000406296 293 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.07□□□□□ -1.92
MSH3P20585 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 AC245054.2-201ENST00000415639 319 ntBASIC3.07□□□□□ -1.92
MSH3P20585 MTATP6P18-201ENST00000417994 673 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AL353193.1-201ENST00000421444 268 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
MSH3P20585 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 USP12PX-201ENST00000432383 1057 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RPS15AP9-201ENST00000439856 381 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RPS12P18-201ENST00000442381 270 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC079781.2-201ENST00000446424 169 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RPL23AP20-201ENST00000447965 421 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.07□□□□□ -1.92
MSH3P20585 SNRPGP6-201ENST00000451124 220 ntBASIC3.07□□□□□ -1.92
MSH3P20585 UQCRHP3-201ENST00000451503 251 ntBASIC3.07□□□□□ -1.92
MSH3P20585 snoU13.22-201ENST00000459428 104 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RPS23P3-201ENST00000470993 430 ntBASIC3.07□□□□□ -1.92
MSH3P20585 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH3P20585 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH3P20585 RNU7-51P-201ENST00000516560 62 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RN7SKP272-201ENST00000516988 232 ntBASIC3.07□□□□□ -1.92
MSH3P20585 RNU6-410P-201ENST00000517006 107 ntBASIC3.07□□□□□ -1.92
MSH3P20585 SNORA70.24-201ENST00000517233 118 ntBASIC3.07□□□□□ -1.92
MSH3P20585 HMGB1P41-201ENST00000520234 440 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 ERHP1-201ENST00000523006 310 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AP003034.1-201ENST00000534621 422 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 AC025449.1-201ENST00000603896 529 ntBASIC3.07□□□□□ -1.92
MSH3P20585 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 AC004832.5-201ENST00000608677 401 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AL442067.2-201ENST00000614033 363 ntBASIC3.07□□□□□ -1.92
MSH3P20585 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH3P20585 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
MSH3P20585 AF117829.1-206ENST00000621883 3802 ntBASIC3.07□□□□□ -1.92
MSH3P20585 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms