Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC090132.2-201ENST00000615881 347 ntBASIC3.67□□□□□ -1.82
HOXA3O43365 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA3O43365 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA3O43365 AC068724.3-201ENST00000625906 87 ntBASIC3.67□□□□□ -1.82
HOXA3O43365 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 AC091812.1-201ENST00000432235 1948 ntBASIC3.67□□□□□ -1.82
HOXA3O43365 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA3O43365 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXA3O43365 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA3O43365 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 AC116096.1-201ENST00000566804 2314 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HOXA3O43365 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 NCAPGP1-201ENST00000505112 1814 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MIR412-201ENST00000362142 91 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-37P-201ENST00000362692 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 Y_RNA.176-201ENST00000363815 109 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-11P-201ENST00000364234 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-7-201ENST00000364784 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-8-201ENST00000365467 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-25P-201ENST00000383873 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-1-201ENST00000383898 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-1279P-201ENST00000383917 103 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-48P-201ENST00000384161 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-36P-201ENST00000384172 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-4P-201ENST00000384205 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-5P-201ENST00000384238 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-3P-201ENST00000384314 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-16P-201ENST00000384385 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-15P-201ENST00000384534 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-2-201ENST00000384627 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-29P-201ENST00000384637 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-9-201ENST00000384776 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-33P-201ENST00000384793 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MIR1193-201ENST00000408109 78 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MIR1290-201ENST00000408735 78 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 SNORA11-201ENST00000408789 128 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-325P-201ENST00000411132 105 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA3O43365 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA3O43365 MRPS18CP6-201ENST00000423587 223 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 AC007919.1-201ENST00000429380 217 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 AC099799.1-201ENST00000439809 192 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA3O43365 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 NUTF2P7-201ENST00000453086 375 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RN7SL303P-201ENST00000469773 251 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RN7SL810P-201ENST00000493031 276 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 RNU4-77P-201ENST00000516692 156 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNA5SP290-201ENST00000517133 127 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 TRAV32-201ENST00000553993 340 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 CYCSP40-201ENST00000575927 294 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 AC113195.1-201ENST00000579952 141 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 MIR4273-201ENST00000582824 84 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RNU6-6P-201ENST00000606623 107 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXA3O43365 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 MFSD8-242ENST00000641690 4199 ntBASIC3.66□□□□□ -1.82
HOXA3O43365 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
HOXA3O43365 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA3O43365 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
HOXA3O43365 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.82
HOXA3O43365 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.65□□□□□ -1.82
HOXA3O43365 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA3O43365 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HOXA3O43365 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA3O43365 Y_RNA.48-201ENST00000362710 103 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RNA5SP28-201ENST00000363841 119 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 Y_RNA.193-201ENST00000363979 102 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 Y_RNA.389-201ENST00000383924 113 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 SDHCP2-201ENST00000398565 501 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AC009237.10-201ENST00000414112 510 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 TMSB10P2-201ENST00000416049 131 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 RPL27AP8-201ENST00000424277 446 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms