Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 RN7SKP160-201ENST00000363804 340 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.405-201ENST00000383979 100 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.451-201ENST00000384200 100 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-804P-201ENST00000384286 107 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.524-201ENST00000384564 100 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.561-201ENST00000384694 100 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 SNORA77-201ENST00000408716 125 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 BX323845.1-201ENST00000432417 179 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 CFL1P1-202ENST00000432948 411 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 PIGFP3-201ENST00000441918 722 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AL356981.1-201ENST00000454879 684 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC009127.1-201ENST00000467090 155 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC091021.1-201ENST00000468051 388 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC023424.1-201ENST00000496058 459 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC108145.1-201ENST00000503770 153 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 SEPT14P8-201ENST00000508026 178 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 SNORD116-28-201ENST00000516123 91 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 IGKV2-18-201ENST00000522607 343 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 MRPS36P4-201ENST00000534436 298 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC103996.1-201ENST00000555468 102 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AL161798.1-201ENST00000604630 131 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC104465.1-201ENST00000611365 139 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AL365265.1-201ENST00000621045 234 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC091953.5-201ENST00000622919 233 ntBASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.55□□□□□ -1.68
HIF3AQ9Y2N7 AL731532.2-201ENST00000623542 1953 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 LINC01109-201ENST00000603837 3081 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 SCARNA15-201ENST00000607520 4325 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 MIR412-201ENST00000362142 91 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-173P-201ENST00000364215 104 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-740P-201ENST00000364734 105 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-290P-201ENST00000365212 101 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 SNORA12.2-201ENST00000391040 156 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RN7SKP114-201ENST00000410327 279 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-1025P-201ENST00000410629 104 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AL158156.1-201ENST00000422509 473 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AL450023.3-201ENST00000440592 271 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AL354714.3-201ENST00000447284 493 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC079354.2-201ENST00000453523 154 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RPS17P2-201ENST00000461663 408 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 OR2AO1P-201ENST00000476497 403 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RN7SL177P-201ENST00000476596 299 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AL049874.1-201ENST00000489560 388 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 ENPP7P9-201ENST00000514456 627 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU7-200P-201ENST00000516105 62 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-496P-201ENST00000516145 99 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 CASP1P1-201ENST00000526345 212 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC084851.1-201ENST00000529105 249 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC240442.1-201ENST00000616055 283 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.54□□□□□ -1.68
HIF3AQ9Y2N7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms