Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC104472.2-201ENST00000469035 601 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 RNA5SP401-201ENST00000515920 127 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 SNORD60.2-201ENST00000516883 86 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 SNORA31.19-201ENST00000517079 126 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC009902.1-201ENST00000519351 183 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 MIR3941-201ENST00000582572 103 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC244505.7-201ENST00000599675 272 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AL645944.1-201ENST00000603857 493 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 DISC2.1-201ENST00000612827 205 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 AC112484.5-201ENST00000624189 228 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 FER-210ENST00000628534 558 ntTSL 5 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
DDX56Q9NY93 HSPA8P4-201ENST00000511877 1920 ntBASIC4.03□□□□□ -1.76
DDX56Q9NY93 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
DDX56Q9NY93 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC110774.1-201ENST00000623567 2018 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 RNA5SP443-201ENST00000363083 132 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 RNU6-1090P-201ENST00000364065 94 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 RNU6-393P-201ENST00000384475 107 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 RNU6-1179P-201ENST00000384667 107 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 Z98941.1-201ENST00000407764 100 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC084198.1-201ENST00000477747 402 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC092989.1-201ENST00000481235 277 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 TRBV12-2-201ENST00000489763 344 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AP002812.1-201ENST00000495378 474 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 RNU4-29P-201ENST00000515943 174 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 RN7SKP209-201ENST00000516888 304 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 MTND1P35-201ENST00000526739 508 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.02□□□□□ -1.77
DDX56Q9NY93 NUTF2P8-201ENST00000604593 363 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AL137849.1-201ENST00000604767 169 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC007938.3-201ENST00000604965 623 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 SNORA51-201ENST00000606420 132 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 MIR6867-201ENST00000610636 67 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 AC007014.2-201ENST00000615581 479 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 uc_338.34-201ENST00000617467 174 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 RLIMP1-201ENST00000339626 1680 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DDX56Q9NY93 AL354685.2-201ENST00000448218 1447 ntBASIC4.02□□□□□ -1.77
DDX56Q9NY93 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
DDX56Q9NY93 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
DDX56Q9NY93 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
DDX56Q9NY93 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC110491.1-201ENST00000562191 2010 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 RNU6-371P-201ENST00000364283 108 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 RNU6-715P-201ENST00000365204 103 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 RNU6-1027P-201ENST00000383998 107 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 RNU6-45P-201ENST00000384471 107 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 SNORA40C-201ENST00000391285 128 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 AL356057.2-201ENST00000403318 432 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 AL136116.1-201ENST00000403591 381 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 RPL21P65-201ENST00000406094 466 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 RNU6-193P-201ENST00000410977 107 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 MTND1P23-201ENST00000416931 372 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 HSPE1P1-201ENST00000421494 318 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 SKA2P1-201ENST00000425592 390 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 TOMM20P4-201ENST00000427861 435 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 ARF4P2-201ENST00000430209 526 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 CYCSP32-201ENST00000440548 321 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 NDUFB1P2-201ENST00000449477 176 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 RPS7P7-201ENST00000463499 571 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC026979.1-201ENST00000492525 396 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 RPS27AP10-201ENST00000496103 208 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC091885.1-201ENST00000506658 268 ntBASIC4.01□□□□□ -1.77
DDX56Q9NY93 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.01□□□□□ -1.77
DDX56Q9NY93 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms