Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORD97-201ENST00000459187 142 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RPL9P33-201ENST00000484311 566 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNA5SP341-201ENST00000516261 117 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RPS3AP4-201ENST00000555161 764 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AL391261.3-201ENST00000557194 520 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 MIR4298-201ENST00000584380 73 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNU6-87P-201ENST00000607561 108 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC012360.2-201ENST00000609349 391 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC138749.5-201ENST00000611461 208 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC116165.2-201ENST00000616705 206 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC092140.2-201ENST00000618027 521 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC009878.1-201ENST00000621819 340 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 FRG1KP-201ENST00000623592 341 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC091953.2-201ENST00000623979 160 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC120349.3-201ENST00000624377 529 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AP003399.1-201ENST00000637534 361 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 ZNF519P1-201ENST00000449011 1626 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 MTND5P29-201ENST00000458676 1807 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AL035425.3-201ENST00000564206 4996 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RNY4P16-201ENST00000364768 94 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 SNORD15B-201ENST00000384714 146 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 NDUFS5P1-201ENST00000405668 289 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 FCF1P10-201ENST00000407590 479 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AL451074.5-201ENST00000415894 435 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC019097.1-201ENST00000424783 735 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 HMGB1P27-201ENST00000431429 603 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AL445567.1-201ENST00000439121 144 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RPL12P25-201ENST00000455592 494 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RPL37P6-201ENST00000460682 294 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 MTCO2P6-201ENST00000463134 685 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RBM43P1-201ENST00000476891 1081 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC103975.1-201ENST00000482506 483 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC109486.1-201ENST00000486833 374 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RN7SL20P-201ENST00000488827 297 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 RN7SL633P-201ENST00000488974 297 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 MTCO1P47-201ENST00000523889 1271 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AP006587.4-201ENST00000526053 529 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC022878.1-201ENST00000530684 149 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 MIR3915-201ENST00000578518 97 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AC099506.2-201ENST00000623074 221 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 MTND4P4-201ENST00000439033 1366 ntBASIC2.7□□□□□ -1.98
DDX28Q9NUL7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.7□□□□□ -1.98
DDX28Q9NUL7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RPL9P7-201ENST00000330965 580 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC073325.2-201ENST00000339545 159 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RNU6-701P-201ENST00000384059 107 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RNA5SP354-201ENST00000391247 136 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RAC1P6-201ENST00000423911 575 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC010153.1-201ENST00000432862 727 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 MTND1P28-201ENST00000435623 950 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SNRPEP9-201ENST00000436794 238 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 UBE2D3P4-201ENST00000441973 436 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 USP9YP12-201ENST00000450481 570 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SSXP1-201ENST00000453640 473 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AP000705.1-201ENST00000454567 350 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 MTND1P12-201ENST00000455231 147 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 MRPS17P3-201ENST00000465453 385 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RPS27P26-201ENST00000494583 239 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 RNU2-10P-201ENST00000516375 211 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC022080.3-201ENST00000544433 482 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms