Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 OR10R1P-201ENST00000441524 1141 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 AP1S2P1-201ENST00000457344 379 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 NDUFB4P2-201ENST00000509515 391 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 SNORA31.22-201ENST00000517204 135 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC023632.1-201ENST00000518463 375 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 uc_338.5-201ENST00000611839 155 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC003001.2-201ENST00000616294 831 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC068057.2-201ENST00000624047 895 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 MIR203B-201ENST00000636080 86 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USP42Q9H9J4 DDX10P1-201ENST00000448545 1933 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 BX664727.1-201ENST00000416024 466 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 Z75741.2-201ENST00000417272 1167 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 HMGN2P38-201ENST00000423806 265 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 COX6CP12-201ENST00000446748 202 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 MRPS17P3-201ENST00000465453 385 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 MRPL42P6-201ENST00000486397 371 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 MTCO2P9-201ENST00000503214 694 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 KLRA1P-201ENST00000503499 986 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC114786.4-201ENST00000508771 728 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC114797.1-201ENST00000514003 728 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 SCARNA15.2-201ENST00000516409 127 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL391261.3-201ENST00000557194 520 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL731537.2-201ENST00000561565 951 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC103987.3-201ENST00000582071 292 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AL645939.4-201ENST00000604495 135 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
USP42Q9H9J4 AC008498.1-201ENST00000613012 531 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 MIR6130-201ENST00000619419 109 ntBASIC2.15□□□□□ -2.07
USP42Q9H9J4 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
USP42Q9H9J4 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC080100.1-201ENST00000624239 5356 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 SUCLA2P2-201ENST00000417269 1309 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
USP42Q9H9J4 HMGB1P17-201ENST00000403495 628 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 RNU2-49P-201ENST00000410666 184 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 MTCYBP15-201ENST00000433123 1127 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 PIGFP3-201ENST00000441918 722 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 TPT1P14-201ENST00000448018 505 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 BX322784.1-201ENST00000455793 1077 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AP001189.2-201ENST00000527320 189 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC087441.2-201ENST00000529141 262 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AGGF1P5-201ENST00000567900 919 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC080013.4-201ENST00000607624 649 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC012467.1-201ENST00000607740 256 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 MIR8084-201ENST00000614105 89 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AC084824.4-201ENST00000620106 731 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 AL589994.2-201ENST00000621124 579 ntBASIC2.14□□□□□ -2.07
USP42Q9H9J4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
USP42Q9H9J4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
USP42Q9H9J4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP42Q9H9J4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 RNU6-392P-201ENST00000364926 101 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 RNU4-52P-201ENST00000384209 138 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 RNU2-68P-201ENST00000410878 191 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC004965.1-201ENST00000413033 213 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 ARF4P4-201ENST00000439608 520 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC002381.1-201ENST00000447049 280 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC096571.1-202ENST00000506634 735 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 RNA5SP364-201ENST00000516938 78 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 BTF3P12-201ENST00000519620 469 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms