Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AL359385.1-201ENST00000456509 365 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNU6-420P-201ENST00000458780 107 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNA5SP310-201ENST00000459084 116 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RN7SL432P-201ENST00000484057 298 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 MTND1P3-201ENST00000484956 952 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 NDUFB4P2-201ENST00000509515 391 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNU2-46P-201ENST00000517038 113 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC137800.2-201ENST00000574375 120 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC174048.1-201ENST00000603389 144 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC072046.2-201ENST00000618366 268 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 MTND5P19-201ENST00000424872 1794 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 OR4G2P-202ENST00000641004 1759 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP44Q9H0E7 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 RNU6-511P-201ENST00000363496 107 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 Y_RNA.559-201ENST00000384686 107 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 MIR181A2-201ENST00000384863 110 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 RNU6-248P-201ENST00000410720 107 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC009961.2-201ENST00000435771 251 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC105272.1-201ENST00000438604 198 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 GTF3AP2-201ENST00000557014 266 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AL845331.3-202ENST00000562856 261 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC002545.1-201ENST00000592511 181 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AL161729.4-201ENST00000604650 476 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC004696.1-201ENST00000614345 607 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC068831.7-201ENST00000616954 363 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC010338.1-201ENST00000621823 717 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC006111.3-201ENST00000622137 383 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC027309.3-201ENST00000623419 351 ntBASIC3.51□□□□□ -1.85
USP44Q9H0E7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.51□□□□□ -1.85
USP44Q9H0E7 AC007785.2-201ENST00000598627 1916 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 RNU6-960P-201ENST00000364056 120 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 OR5H15-201ENST00000383696 930 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RNU6-1119P-201ENST00000384349 108 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 MIR591-201ENST00000385290 95 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 EI24P2-201ENST00000397776 1076 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 RPS15AP12-201ENST00000419498 388 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RAC1P6-201ENST00000423911 575 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC087499.2-201ENST00000432861 149 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RPL36AP6-201ENST00000435770 321 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RPS24P1-201ENST00000438550 371 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RPS24P13-201ENST00000442520 397 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC003982.1-202ENST00000469928 248 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 RBM43P1-201ENST00000476891 1081 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RNU6-1256P-201ENST00000516539 103 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RNU7-51P-201ENST00000516560 62 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 Vault.3-201ENST00000516676 95 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 RNA5SP337-201ENST00000517007 109 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AP003181.2-201ENST00000528941 181 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 AGGF1P4-201ENST00000568249 801 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC012213.3-201ENST00000577199 777 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.5□□□□□ -1.85
USP44Q9H0E7 ELOCP29-201ENST00000588193 334 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC245014.2-201ENST00000603689 287 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC246785.4-201ENST00000605374 287 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC103710.2-201ENST00000609912 942 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC084782.3-201ENST00000612282 578 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 HULC.1-201ENST00000612720 240 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AC006338.1-201ENST00000618453 749 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 AL136313.1-201ENST00000624804 202 ntBASIC3.5□□□□□ -1.85
USP44Q9H0E7 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP44Q9H0E7 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms