Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AL136164.4-201ENST00000625013 2135 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 Y_RNA.146-201ENST00000363549 102 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 SNORD6-201ENST00000365444 73 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 RNU6-898P-201ENST00000365627 104 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AL592291.1-201ENST00000403830 352 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 ARL4AP5-201ENST00000404372 599 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 RNA5SP31-201ENST00000411144 127 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 HIGD1AP11-201ENST00000438361 280 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 NUTF2P3-201ENST00000448540 384 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC012308.1-201ENST00000451232 178 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 U8.21-201ENST00000459536 136 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 SMURF2P1-201ENST00000514992 481 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC080078.3-201ENST00000605407 463 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AL121917.1-203ENST00000605534 577 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 HOTTIP_4.1-201ENST00000618195 165 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 U3.53-201ENST00000628922 216 ntBASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRAIPQ9BWF2 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
TRAIPQ9BWF2 AC015813.6-201ENST00000624409 5808 ntBASIC5.09□□□□□ -1.6
TRAIPQ9BWF2 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
TRAIPQ9BWF2 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.6
TRAIPQ9BWF2 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
TRAIPQ9BWF2 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC066616.2-201ENST00000559334 1481 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 RNU6-270P-201ENST00000364131 105 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 RN7SKP280-201ENST00000364196 304 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 SNORA70.2-201ENST00000364506 135 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 RNU6-827P-201ENST00000365553 106 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 MIR517A-201ENST00000385001 87 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 Z98745.1-201ENST00000402553 494 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AL030996.1-201ENST00000411430 235 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 Z99755.1-201ENST00000414048 380 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC007677.1-201ENST00000445757 515 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 HMGB3P22-202ENST00000451823 572 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 RNU7-187P-201ENST00000458985 68 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC108751.2-201ENST00000469993 231 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 RNU6-307P-201ENST00000516743 106 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AP001781.1-201ENST00000530977 207 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AP000867.2-201ENST00000532468 320 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AL161729.3-201ENST00000603533 673 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 CYP2C61P-201ENST00000604072 290 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AL591516.1-201ENST00000611326 274 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 MIR3199-2-201ENST00000636243 86 ntBASIC5.08□□□□□ -1.6
TRAIPQ9BWF2 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 RNA5SP447-201ENST00000363749 119 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 RNU6-306P-201ENST00000384617 107 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 U3.22-201ENST00000391120 215 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 RNU6-1050P-201ENST00000410388 107 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 RNU6-1304P-201ENST00000411374 106 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC016831.2-201ENST00000417179 352 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 SCARNA10-201ENST00000459255 330 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC146944.2-203ENST00000502493 354 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC114801.2-201ENST00000503825 781 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC021146.3-201ENST00000511911 260 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC139495.1-202ENST00000513164 354 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AL391261.3-201ENST00000557194 520 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 MIR4277-201ENST00000578298 84 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AL139395.1-201ENST00000603662 160 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC018889.1-201ENST00000605372 397 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AL731566.2-201ENST00000618971 317 ntBASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TRAIPQ9BWF2 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms