Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
LINC00643Q86TS7 AC025857.1-201ENST00000525252 377 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC0.52□□□□□ -2.33
LINC00643Q86TS7 AC106782.4-201ENST00000568264 210 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC0.52□□□□□ -2.33
LINC00643Q86TS7 AC104763.2-201ENST00000604179 382 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 MIR6730-201ENST00000622213 67 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 AL136313.1-201ENST00000624804 202 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 RBBP8P1-201ENST00000449447 1844 ntBASIC0.52□□□□□ -2.33
LINC00643Q86TS7 AC010889.1-201ENST00000566193 2666 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RNU1-22P-201ENST00000363334 158 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RNU6-439P-201ENST00000384188 106 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RNU6-882P-201ENST00000391025 103 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 POLR2J4-204ENST00000418424 324 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 ZDHHC20P2-201ENST00000424108 429 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 CST2P1-201ENST00000425770 87 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 MTND5P15-201ENST00000434246 349 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AC025750.2-201ENST00000442609 450 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RAC1P7-201ENST00000445367 377 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RPS23P4-201ENST00000487908 423 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RPL36AP21-201ENST00000490372 323 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 ACA64.5-201ENST00000516207 127 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 snoZ278.1-201ENST00000517059 112 ntBASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
LINC00643Q86TS7 AC046144.1-201ENST00000478559 1853 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 HSBP1P2-201ENST00000299671 229 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RNU6-486P-201ENST00000363116 107 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RNU1-36P-201ENST00000365130 165 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RNA5SP240-201ENST00000365355 128 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 SNORA25B-201ENST00000365507 128 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 MIR585-201ENST00000384887 94 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RN7SKP223-201ENST00000410582 62 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC069282.1-201ENST00000411911 526 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AL807761.1-201ENST00000417622 171 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC009518.2-201ENST00000418056 731 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 Z93242.1-201ENST00000427102 353 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RPS20P24-201ENST00000457473 361 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RPL30P9-201ENST00000465586 330 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 RPS26P55-201ENST00000471178 356 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 CKS1BP2-201ENST00000497342 240 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AP002748.2-201ENST00000528671 348 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AL161670.1-201ENST00000554348 137 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC004817.2-201ENST00000561794 651 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC012414.6-201ENST00000568241 401 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 MIR3683-201ENST00000580847 82 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 MIR4697-201ENST00000582977 78 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AL035411.2-201ENST00000604022 421 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC010900.2-201ENST00000604508 210 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC012468.1-201ENST00000604888 430 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 MTND4LP5-201ENST00000605152 292 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC007349.4-201ENST00000608114 532 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.5□□□□□ -2.33
LINC00643Q86TS7 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
LINC00643Q86TS7 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 NF1-214ENST00000490416 1329 ntTSL 3 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 OR5T3-201ENST00000303059 1023 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 SNORA29-201ENST00000384183 140 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AL160275.3-201ENST00000423876 471 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 MED14P1-201ENST00000430517 648 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AC024082.2-201ENST00000434771 238 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 FABP5P14-201ENST00000437273 393 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AC008481.1-201ENST00000463278 396 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 UBL5P3-201ENST00000475112 231 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AC093852.1-201ENST00000503587 266 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 PSMC1P5-201ENST00000512850 177 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 RNU6-322P-201ENST00000516010 103 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 SCARNA16.2-201ENST00000516520 172 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 RNU1-92P-201ENST00000517017 135 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 RAB11AP2-201ENST00000545905 639 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 DUXAP1-201ENST00000556632 463 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AC007151.1-201ENST00000572774 483 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 AL645939.4-201ENST00000604495 135 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms