Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNF138P2-201ENST00000603490 592 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 AL645944.1-201ENST00000603857 493 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 AC099669.2-201ENST00000616549 437 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 AC091953.3-201ENST00000623220 236 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 MAPK10-304ENST00000641341 3984 ntBASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.46□□□□□ -1.7
UBE3DQ7Z6J8 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 RNU6-512P-201ENST00000364438 103 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 U3.13-201ENST00000364804 214 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 MIR514A1-201ENST00000385133 98 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 SNORA68.2-201ENST00000391263 128 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 RNU6-1203P-201ENST00000410703 110 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 RNU2-25P-201ENST00000411041 191 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC140479.3-201ENST00000418944 1126 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 MYL8P-204ENST00000431574 518 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 H2AFZP5-201ENST00000446960 382 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AL445433.1-201ENST00000457507 257 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AL591473.1-201ENST00000464297 313 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 MED28P2-201ENST00000475771 317 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC074250.1-201ENST00000511117 192 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC067942.3-201ENST00000512025 362 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 MIR2355-201ENST00000517199 87 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC022080.3-201ENST00000544433 482 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 HNRNPCP4-201ENST00000571636 900 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 MIR3921-201ENST00000577308 85 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC091042.1-201ENST00000579213 173 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC209154.1-201ENST00000582156 337 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC006077.1-201ENST00000604746 343 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 Z75746.1-201ENST00000440243 2080 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 AC107068.1-201ENST00000563286 4218 ntBASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
UBE3DQ7Z6J8 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL590240.1-201ENST00000334118 313 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SNORD81.1-201ENST00000363064 77 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RNY1-201ENST00000364228 113 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RNU6-384P-201ENST00000364900 104 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 Y_RNA.352-201ENST00000365439 102 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SNORD58.1-201ENST00000391313 66 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL022722.2-201ENST00000402519 180 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL117339.3-201ENST00000418733 162 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 PIGPP3-201ENST00000425307 415 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL627311.1-201ENST00000431514 115 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RPS27P18-201ENST00000431701 247 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC016831.4-201ENST00000438302 307 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 FABP5P15-201ENST00000453566 214 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RN7SL610P-201ENST00000463845 291 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC108751.2-201ENST00000469993 231 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC022795.1-201ENST00000473808 480 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC083982.1-201ENST00000485679 344 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 RPL36AP41-201ENST00000493820 306 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 SCARNA15.2-201ENST00000516409 127 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 MIR4480-201ENST00000582492 71 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC009318.2-201ENST00000610917 651 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL049539.1-201ENST00000611964 459 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AL356489.2-201ENST00000566968 3528 ntBASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
UBE3DQ7Z6J8 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms