Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AL161423.1-201ENST00000613700 262 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AC005086.4-201ENST00000623065 213 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.27□□□□□ -1.73
USP53Q70EK8 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
USP53Q70EK8 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.27□□□□□ -1.73
USP53Q70EK8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.26□□□□□ -1.73
USP53Q70EK8 AL158163.1-201ENST00000603915 1649 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.26□□□□□ -1.73
USP53Q70EK8 RN7SKP280-201ENST00000364196 304 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNA5SP151-201ENST00000365632 117 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-1329P-201ENST00000365664 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-639P-201ENST00000384074 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-890P-201ENST00000384121 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU1-13P-201ENST00000384499 162 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-1179P-201ENST00000384667 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 MIR3065-201ENST00000390137 79 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-308P-201ENST00000390957 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 SNORA11F-201ENST00000408237 128 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNA5SP317-201ENST00000410176 116 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-293P-201ENST00000411259 106 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNA5SP311-201ENST00000411290 116 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RPS20P14-201ENST00000412545 360 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.26□□□□□ -1.73
USP53Q70EK8 UBE2D3P2-201ENST00000424409 445 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 HMGB1P9-201ENST00000429856 646 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RANP8-201ENST00000444720 713 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.26□□□□□ -1.73
USP53Q70EK8 SNORD5.1-201ENST00000458800 75 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 AL160314.1-201ENST00000490836 438 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 HMGB1P30-201ENST00000492455 606 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNA5SP315-201ENST00000516340 116 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 SNORA70.16-201ENST00000516390 95 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNA5SP312-201ENST00000517068 116 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-1073P-201ENST00000517182 106 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 RNU6-988P-201ENST00000519081 107 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.26□□□□□ -1.73
USP53Q70EK8 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.26□□□□□ -1.73
USP53Q70EK8 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.26□□□□□ -1.73
USP53Q70EK8 AC006130.2-201ENST00000586202 326 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 NUTF2P8-201ENST00000604593 363 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 ELOCP5-201ENST00000604924 333 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 AC091905.2-201ENST00000623143 306 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 AL672167.1-203ENST00000641299 2975 ntBASIC4.26□□□□□ -1.73
USP53Q70EK8 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.26□□□□□ -1.73
USP53Q70EK8 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP53Q70EK8 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP53Q70EK8 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.25□□□□□ -1.73
USP53Q70EK8 MIR383-201ENST00000362257 73 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 Y_RNA.33-201ENST00000362591 102 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 Y_RNA.404-201ENST00000383978 102 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 MIR195-201ENST00000385194 87 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 SNORD96B-201ENST00000386148 79 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RNA5SP171-201ENST00000391071 115 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 SNORA75.6-201ENST00000391318 127 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 Z99755.1-201ENST00000414048 380 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 RPL23AP25-201ENST00000430973 463 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RPL23AP52-201ENST00000439311 478 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.25□□□□□ -1.73
USP53Q70EK8 NOTCH2P1-201ENST00000443481 624 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AC133473.1-201ENST00000455173 299 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 MIR2053-201ENST00000459295 91 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.25□□□□□ -1.73
USP53Q70EK8 RN7SL132P-201ENST00000478131 296 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RNU1-86P-201ENST00000516108 154 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RNU1-107P-201ENST00000516617 154 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 TRAV8-5-201ENST00000537369 341 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.25□□□□□ -1.73
USP53Q70EK8 AL352979.3-201ENST00000553515 247 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RPL21P7-201ENST00000557463 483 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 TVP23BP1-201ENST00000557500 617 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.25□□□□□ -1.73
USP53Q70EK8 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.25□□□□□ -1.73
USP53Q70EK8 AC005255.1-201ENST00000593748 216 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AC079587.1-201ENST00000603846 277 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AL354984.3-201ENST00000604803 325 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 RNU6-85P-201ENST00000605989 107 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 AC006133.1-201ENST00000617106 264 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.25□□□□□ -1.73
USP53Q70EK8 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.25□□□□□ -1.73
USP53Q70EK8 MIR492-201ENST00000638676 116 ntBASIC4.25□□□□□ -1.73
USP53Q70EK8 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
USP53Q70EK8 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
USP53Q70EK8 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP53Q70EK8 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.25□□□□□ -1.73
USP53Q70EK8 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.25□□□□□ -1.73
USP53Q70EK8 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 220.4 ms