Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 AP001094.1-201ENST00000579805 193 ntBASIC3.11□□□□□ -1.91
MSH3P20585 MTATP6P3-201ENST00000581686 676 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL391646.1-201ENST00000603860 190 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC012443.1-201ENST00000605605 231 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 CR381653.2-201ENST00000624041 768 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL157786.1-207ENST00000627771 695 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MSH3P20585 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MSH3P20585 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
MSH3P20585 FAM35CP-201ENST00000554755 2470 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.11□□□□□ -1.91
MSH3P20585 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH3P20585 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH3P20585 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.1□□□□□ -1.91
MSH3P20585 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH3P20585 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH3P20585 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH3P20585 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH3P20585 RNU6-108P-201ENST00000365558 107 ntBASIC3.1□□□□□ -1.91
MSH3P20585 RNU6-39P-201ENST00000384344 107 ntBASIC3.1□□□□□ -1.91
MSH3P20585 Y_RNA.554-201ENST00000384672 102 ntBASIC3.1□□□□□ -1.91
MSH3P20585 SNORD15B-201ENST00000384714 146 ntBASIC3.1□□□□□ -1.91
MSH3P20585 RPL21P3-201ENST00000395517 478 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC110754.1-201ENST00000399740 601 ntBASIC3.1□□□□□ -1.91
MSH3P20585 MIR548F1-201ENST00000408667 84 ntBASIC3.1□□□□□ -1.91
MSH3P20585 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.1□□□□□ -1.91
MSH3P20585 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.1□□□□□ -1.91
MSH3P20585 NDUFB4P5-201ENST00000415445 361 ntBASIC3.1□□□□□ -1.91
MSH3P20585 TIMM9P3-201ENST00000428659 274 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH3P20585 AC002486.1-201ENST00000435098 391 ntBASIC3.1□□□□□ -1.91
MSH3P20585 GAPDHP27-201ENST00000447427 1020 ntBASIC3.1□□□□□ -1.91
MSH3P20585 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH3P20585 AC146507.2-201ENST00000460608 476 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC008481.1-201ENST00000463278 396 ntBASIC3.1□□□□□ -1.91
MSH3P20585 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH3P20585 RNU2-10P-201ENST00000516375 211 ntBASIC3.1□□□□□ -1.91
MSH3P20585 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
MSH3P20585 AP001893.2-201ENST00000526949 202 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.1□□□□□ -1.91
MSH3P20585 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH3P20585 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.1□□□□□ -1.91
MSH3P20585 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH3P20585 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH3P20585 MIR5004-201ENST00000579078 107 ntBASIC3.1□□□□□ -1.91
MSH3P20585 MIR5195-201ENST00000583555 115 ntBASIC3.1□□□□□ -1.91
MSH3P20585 UBL5P2-201ENST00000583788 219 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC105224.1-201ENST00000587055 421 ntBASIC3.1□□□□□ -1.91
MSH3P20585 GLUD1P4-201ENST00000590914 418 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC017083.3-201ENST00000609955 700 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AL390240.1-201ENST00000612950 384 ntBASIC3.1□□□□□ -1.91
MSH3P20585 U6atac.1-201ENST00000616025 117 ntBASIC3.1□□□□□ -1.91
MSH3P20585 SNHG22-203ENST00000617833 660 ntBASIC3.1□□□□□ -1.91
MSH3P20585 AC009161.2-201ENST00000624626 138 ntBASIC3.1□□□□□ -1.91
MSH3P20585 MIR4275-201ENST00000636486 87 ntBASIC3.1□□□□□ -1.91
MSH3P20585 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.09□□□□□ -1.91
MSH3P20585 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 HSPE1P11-201ENST00000339579 310 ntBASIC3.09□□□□□ -1.91
MSH3P20585 RNU6-1097P-201ENST00000363586 107 ntBASIC3.09□□□□□ -1.91
MSH3P20585 RNU6-1284P-201ENST00000363701 100 ntBASIC3.09□□□□□ -1.91
MSH3P20585 RNU6-173P-201ENST00000364215 104 ntBASIC3.09□□□□□ -1.91
MSH3P20585 SNORA70.4-201ENST00000365509 134 ntBASIC3.09□□□□□ -1.91
MSH3P20585 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MSH3P20585 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
MSH3P20585 SNORA7.4-201ENST00000384249 137 ntBASIC3.09□□□□□ -1.91
MSH3P20585 RNU6-456P-201ENST00000384493 107 ntBASIC3.09□□□□□ -1.91
MSH3P20585 SAR1AP2-201ENST00000392696 594 ntBASIC3.09□□□□□ -1.91
MSH3P20585 RNU2-36P-201ENST00000410361 191 ntBASIC3.09□□□□□ -1.91
MSH3P20585 GPR143P-201ENST00000434155 205 ntBASIC3.09□□□□□ -1.91
MSH3P20585 UBE2V1P8-201ENST00000437166 265 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC140076.1-201ENST00000449897 361 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 AC013267.1-201ENST00000458227 267 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC010631.1-201ENST00000474150 156 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.09□□□□□ -1.91
MSH3P20585 AC019235.1-201ENST00000503847 207 ntBASIC3.09□□□□□ -1.91
MSH3P20585 VN1R104P-201ENST00000505115 1009 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.09□□□□□ -1.91
MSH3P20585 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 FAM60DP-201ENST00000524174 632 ntBASIC3.09□□□□□ -1.91
MSH3P20585 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.09□□□□□ -1.91
MSH3P20585 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.09□□□□□ -1.91
MSH3P20585 SUB1P2-201ENST00000556401 297 ntBASIC3.09□□□□□ -1.91
MSH3P20585 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH3P20585 AF038458.1-201ENST00000588406 262 ntBASIC3.09□□□□□ -1.91
MSH3P20585 BNIP3P22-201ENST00000593399 556 ntBASIC3.09□□□□□ -1.91
MSH3P20585 YPEL5P2-201ENST00000605553 359 ntBASIC3.09□□□□□ -1.91
MSH3P20585 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.09□□□□□ -1.91
MSH3P20585 AC090517.2-201ENST00000614966 680 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms