Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MIR4781-201ENST00000585250 76 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.6-201ENST00000603753 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.11-201ENST00000604059 253 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.10-201ENST00000604330 253 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC008162.1-201ENST00000604718 254 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.1-201ENST00000604752 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.2-201ENST00000604983 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.5-201ENST00000605253 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.4-201ENST00000605279 254 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.12-201ENST00000605291 253 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.8-201ENST00000605353 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.9-201ENST00000605428 253 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL670379.7-201ENST00000605823 252 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC091946.2-201ENST00000606105 291 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 RNU6-707P-201ENST00000364647 95 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 RNU6-741P-201ENST00000383889 107 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 EDDM3CP-201ENST00000415977 425 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 SEPT2P1-201ENST00000419651 180 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MTCYBP3-201ENST00000445588 1137 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 SUMO2P2-201ENST00000456482 255 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL049714.1-201ENST00000466686 347 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC013828.1-201ENST00000481845 158 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC105252.1-201ENST00000503089 286 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC096571.1-202ENST00000506634 735 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC008127.2-201ENST00000549925 1075 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC124947.2-202ENST00000552735 133 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC107214.2-201ENST00000608204 634 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC012360.2-201ENST00000609349 391 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC025263.3-201ENST00000622965 1396 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AL049641.1-201ENST00000441055 1948 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 U3.20-201ENST00000390909 217 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 BTF3P4-201ENST00000418852 495 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC093422.3-201ENST00000428506 305 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC092573.2-201ENST00000434546 243 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC140059.1-201ENST00000489238 361 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC022447.1-201ENST00000515358 464 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AC125611.1-201ENST00000549563 229 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 MIR4529-201ENST00000578110 78 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 MTND4LP5-201ENST00000605152 292 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.38□□□□□ -2.19
SCN3AQ9NY46 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.38□□□□□ -2.19
SCN3AQ9NY46 SGO1P1-201ENST00000603525 1447 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 RNU6-661P-201ENST00000362409 107 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 TXNP7-201ENST00000406296 293 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 RNU6-1328P-201ENST00000410938 106 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 RPL31P54-201ENST00000429803 370 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 TRGVB-201ENST00000453257 471 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 SNORA48.10-201ENST00000516965 160 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 NDUFS5P6-201ENST00000529136 295 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 SETP7-201ENST00000552169 453 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 RNU6-882P-201ENST00000391025 103 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AL355615.1-201ENST00000406187 641 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 RNU2-28P-201ENST00000410457 189 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AL513185.2-201ENST00000425543 193 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC241584.1-201ENST00000438469 1241 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 MTCO1P48-201ENST00000448024 1096 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 USP9YP34-201ENST00000453983 808 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 ARL2BPP2-201ENST00000550907 489 ntBASIC1.37□□□□□ -2.19
SCN3AQ9NY46 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SCN3AQ9NY46 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 CIR1P3-201ENST00000405137 479 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 TAF9P1-201ENST00000445421 515 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AL500527.1-201ENST00000448532 255 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 TAF9P2-201ENST00000454958 515 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 RNU7-23P-201ENST00000459465 62 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 RPL36AP21-201ENST00000490372 323 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms