Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.72□□□□□ -1.97
SSX3Q99909 AC069234.5-201ENST00000611056 416 ntBASIC2.72□□□□□ -1.97
SSX3Q99909 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SSX3Q99909 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.72□□□□□ -1.97
SSX3Q99909 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.72□□□□□ -1.97
SSX3Q99909 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SSX3Q99909 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.71□□□□□ -1.97
SSX3Q99909 RNA5SP197-201ENST00000363357 119 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 RNU6-511P-201ENST00000363496 107 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 SNORA38.1-201ENST00000364172 131 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 RNU1-109P-201ENST00000383960 147 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 MIR491-201ENST00000384877 84 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 Z99755.1-201ENST00000414048 380 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 ZNF90P2-204ENST00000419323 1075 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC098614.2-201ENST00000426040 255 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC104651.1-201ENST00000427559 735 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC005300.1-201ENST00000428401 373 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC005326.1-201ENST00000429197 123 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.71□□□□□ -1.98
SSX3Q99909 AL513043.1-201ENST00000439124 535 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC010587.1-201ENST00000505809 469 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SSX3Q99909 AC113155.1-201ENST00000511141 769 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 RNA5SP217-201ENST00000515959 91 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 RNU1-143P-201ENST00000516296 146 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 SCARNA20.6-201ENST00000517251 106 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 SUB1P1-201ENST00000524415 382 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AP006587.4-201ENST00000526053 529 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AP003122.4-201ENST00000530980 758 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 MTCO3P13-201ENST00000577757 781 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 CKS1BP3-201ENST00000600888 237 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC098826.3-201ENST00000603823 466 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 AC068276.1-201ENST00000605793 379 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 AC103710.2-201ENST00000609912 942 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 U1.23-201ENST00000610293 146 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 RNU1-68P-201ENST00000615382 146 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 U1.39-201ENST00000621562 146 ntBASIC2.71□□□□□ -1.98
SSX3Q99909 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SSX3Q99909 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.71□□□□□ -1.98
SSX3Q99909 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
SSX3Q99909 UBE2L2-201ENST00000254302 429 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
SSX3Q99909 RNY3P10-201ENST00000384764 102 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SSX3Q99909 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.7□□□□□ -1.98
SSX3Q99909 RPL32P35-201ENST00000415214 394 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 SEPT2P1-201ENST00000419651 180 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.7□□□□□ -1.98
SSX3Q99909 AL589872.1-201ENST00000426602 288 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.7□□□□□ -1.98
SSX3Q99909 AC137499.1-201ENST00000427602 88 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 ELOCP14-201ENST00000428070 331 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 RPS15AP5-201ENST00000436276 388 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.7□□□□□ -1.98
SSX3Q99909 AC006028.1-201ENST00000438379 402 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 ELOCP7-201ENST00000439968 331 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 NEFMP1-201ENST00000443423 1006 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.7□□□□□ -1.98
SSX3Q99909 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.7□□□□□ -1.98
SSX3Q99909 TAF9P1-201ENST00000445421 515 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 AC008264.1-201ENST00000447612 367 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 TAF9P2-201ENST00000454958 515 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 SNRPGP9-201ENST00000456025 225 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 RN7SL75P-201ENST00000461926 281 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 RPS27AP9-201ENST00000477681 438 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.7□□□□□ -1.98
SSX3Q99909 SNORA31.3-201ENST00000516029 96 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 Y_RNA.672-201ENST00000516289 104 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 RNA5SP471-201ENST00000516971 106 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 RNA5SP337-201ENST00000517007 109 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
SSX3Q99909 AC060788.1-201ENST00000521318 469 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 MTND2P38-201ENST00000522536 667 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 COX6CP5-201ENST00000527162 228 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SSX3Q99909 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.7□□□□□ -1.98
SSX3Q99909 RPS3AP4-201ENST00000555161 764 ntBASIC2.7□□□□□ -1.98
SSX3Q99909 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.7□□□□□ -1.98
SSX3Q99909 AC015917.1-201ENST00000579654 510 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms