Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL591034.1-201ENST00000407447 340 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 RNA5SP44-201ENST00000410446 133 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC099548.1-201ENST00000421443 426 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 OSTCP8-201ENST00000445117 448 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC125238.1-201ENST00000448842 249 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC133473.1-201ENST00000455173 299 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC006445.2-201ENST00000510061 472 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC010265.1-201ENST00000513509 211 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 RNU1-61P-201ENST00000516107 151 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC009812.2-201ENST00000517657 457 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC011447.4-201ENST00000587562 111 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 RPS29P30-201ENST00000600975 111 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AL591926.8-201ENST00000616876 211 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 BX005214.3-202ENST00000619809 325 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AC090740.1-201ENST00000623193 2262 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 AF117829.1-206ENST00000621883 3802 ntBASIC3.9□□□□□ -1.78
CCDC140Q96MF4 C4BPAP1-201ENST00000415474 1893 ntBASIC3.9□□□□□ -1.78
CCDC140Q96MF4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC140Q96MF4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC140Q96MF4 CUL1P1-201ENST00000509510 2425 ntBASIC3.9□□□□□ -1.78
CCDC140Q96MF4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
CCDC140Q96MF4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-942P-201ENST00000363002 107 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RN7SKP115-201ENST00000363177 317 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-270P-201ENST00000364131 105 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-784P-201ENST00000384330 106 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SNORA70.10-201ENST00000384515 134 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SNORD116-20-201ENST00000384529 92 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SNORA66-201ENST00000384792 133 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 HSPE1P26-201ENST00000405341 275 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-1245P-201ENST00000411130 106 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC007738.1-201ENST00000413892 348 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC104333.2-201ENST00000422630 192 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 USP9YP16-201ENST00000430287 407 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL049745.1-201ENST00000433953 286 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RPL34P20-201ENST00000442771 351 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 PCNPP5-201ENST00000452246 481 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL691482.1-201ENST00000453255 87 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 USP9YP23-201ENST00000455085 407 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RPL26P9-201ENST00000457466 433 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC008953.1-201ENST00000497334 318 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-581P-201ENST00000516214 105 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RNU6-397P-201ENST00000516226 104 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RN7SKP272-201ENST00000516988 232 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC092490.3-201ENST00000545370 572 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SYF2P1-201ENST00000550658 413 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 MIR3691-201ENST00000578066 90 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AL451007.1-201ENST00000595491 289 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC100812.1-201ENST00000607622 580 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 AC073869.10-201ENST00000642016 354 ntBASIC3.9□□□□□ -1.79
CCDC140Q96MF4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC140Q96MF4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms