Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC004972.1-201ENST00000623934 2209 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 SNORA63.1-201ENST00000362493 131 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 Y_RNA.367-201ENST00000365544 101 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-744P-201ENST00000365557 107 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU4-48P-201ENST00000365559 182 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-1040P-201ENST00000383974 107 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-1293P-201ENST00000384077 107 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 Y_RNA.447-201ENST00000384184 113 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 Y_RNA.455-201ENST00000384230 98 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-1316P-201ENST00000384242 108 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNY1P14-201ENST00000384426 108 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 Y_RNA.645-201ENST00000391229 102 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RPL7P60-201ENST00000397636 735 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 PRRC2CP1-201ENST00000404428 159 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL139397.2-201ENST00000404529 772 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RN7SKP156-201ENST00000410308 342 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 Y_RNA.646-201ENST00000410980 101 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC080125.1-201ENST00000414888 684 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 SYF2P2-201ENST00000417620 583 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC093151.1-201ENST00000427711 313 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 YME1L1P1-201ENST00000429435 297 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC091286.1-201ENST00000431233 461 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 RPL23AP89-201ENST00000439324 255 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL353748.1-201ENST00000440753 474 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 PCNPP5-201ENST00000452246 481 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RPL23AP62-201ENST00000463396 453 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 TRBVA-201ENST00000498804 316 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-789P-201ENST00000517105 102 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNA5SP179-201ENST00000517284 121 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AF279873.1-201ENST00000523393 313 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 OR5D17P-201ENST00000531492 978 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL356432.3-201ENST00000568952 465 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 MIR5186-201ENST00000577504 120 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 MAGOH2P-202ENST00000584384 429 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC104695.3-201ENST00000604052 296 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AL451044.1-201ENST00000604867 238 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC091167.4-201ENST00000605079 184 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AC098657.3-201ENST00000620434 263 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 RNU6-156P-201ENST00000621869 107 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 AF127577.6-201ENST00000623352 2191 ntBASIC4.1□□□□□ -1.75
CHFRQ96EP1 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 ZNF285B-201ENST00000561698 1767 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC011266.1-201ENST00000624119 3569 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC097504.1-201ENST00000515103 2415 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHFRQ96EP1 RPL23AP57-201ENST00000332361 466 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 SNORA31-201ENST00000362607 130 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RNA5SP399-201ENST00000364003 117 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 Y_RNA.489-201ENST00000384410 101 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RNU6-903P-201ENST00000391270 109 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHFRQ96EP1 RNU6-954P-201ENST00000411355 107 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC069218.2-201ENST00000411665 344 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 EI24P1-201ENST00000416584 867 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC004552.1-201ENST00000419089 348 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RPS15AP12-201ENST00000419498 388 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 AP1S2P1-201ENST00000457344 379 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RPS26P3-201ENST00000470205 348 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RPL7P43-201ENST00000478876 753 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC090543.2-201ENST00000483963 348 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC004057.1-201ENST00000485827 348 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 Y_RNA.680-201ENST00000516441 93 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 RNU6-1038P-201ENST00000516516 104 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 AC007375.1-201ENST00000554513 578 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms