Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 HMGB1P9-201ENST00000429856 646 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 HMGB1P27-201ENST00000431429 603 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RPL23AP20-201ENST00000447965 421 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 snoU13.26-201ENST00000459452 105 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC103975.1-201ENST00000482506 483 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RPS27AP10-201ENST00000496103 208 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC096725.1-201ENST00000514266 313 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP24-201ENST00000516478 95 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP165-201ENST00000517142 115 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 SCARNA11.3-201ENST00000517276 130 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AP004247.1-201ENST00000531556 1289 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 NACAP3-201ENST00000552100 481 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC135507.1-201ENST00000607214 561 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 MIR6817-201ENST00000615588 66 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL355493.4-201ENST00000618530 292 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC135776.4-201ENST00000624300 1904 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC110491.1-201ENST00000562191 2010 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP68-201ENST00000363885 119 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RNU6-157P-201ENST00000383957 107 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RNU6-83P-201ENST00000384568 112 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RNU2-68P-201ENST00000410878 191 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 HMGB1P11-201ENST00000413899 637 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 VPS26BP1-201ENST00000417155 755 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 BPY2DP-201ENST00000422208 265 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 GPM6BP2-201ENST00000432046 144 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC005094.1-201ENST00000440420 368 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 COX6CP2-201ENST00000444980 225 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 GPM6BP1-201ENST00000446387 144 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AP004217.1-201ENST00000480579 346 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RPL23AP41-201ENST00000484754 458 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC055855.1-201ENST00000489563 579 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC098799.2-201ENST00000509466 868 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC022447.1-201ENST00000515358 464 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RNU6-64P-201ENST00000517119 105 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 RN7SKP258-201ENST00000517151 304 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC100870.1-201ENST00000522035 505 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 SNORD53-201ENST00000579969 78 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 MIR4524B-201ENST00000581569 115 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 MIR3616-201ENST00000584070 92 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC091965.4-201ENST00000607691 587 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC090115.4-201ENST00000609970 188 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AL020991.1-201ENST00000612314 373 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 Z99129.2-201ENST00000619967 314 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC012150.2-201ENST00000621300 544 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 AC010338.1-201ENST00000621823 717 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 MIR3199-2-201ENST00000636243 86 ntBASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HDDC3Q8N4P3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 RNU1-73P-201ENST00000383971 164 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 RNU6-769P-201ENST00000384407 104 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 MTND4P13-201ENST00000402078 1023 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 RPL26P27-201ENST00000414397 437 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 MTCO2P21-201ENST00000419780 677 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 UBE2D3P1-201ENST00000436669 444 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 OSTCP8-201ENST00000445117 448 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC108059.3-201ENST00000456388 214 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC128713.1-201ENST00000471495 306 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 ANXA2P1-201ENST00000505539 926 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC098591.2-201ENST00000510152 315 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 RNU5F-8P-201ENST00000515941 111 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC007954.1-201ENST00000554198 494 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms