Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SSXP9-201ENST00000417503 292 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC093106.2-201ENST00000428212 385 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 MTND1P18-201ENST00000448191 573 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 MTND3P16-201ENST00000452205 344 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 snoU13.24-201ENST00000458998 104 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC008481.1-201ENST00000463278 396 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 FTH1P2-201ENST00000466086 412 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC092436.1-201ENST00000506450 503 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 RNU2-27P-201ENST00000516185 142 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 RNU6-1092P-201ENST00000516955 87 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC068657.1-201ENST00000520807 306 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 MIR3160-1-201ENST00000577972 85 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AL353621.2-201ENST00000605340 133 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AL450472.3-201ENST00000615578 367 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 SNHG22-203ENST00000617833 660 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 MIR6130-201ENST00000619419 109 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 U6.114-201ENST00000636407 96 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 GABPAP-201ENST00000419271 1356 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 SNORD9-201ENST00000362566 104 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNU6-1284P-201ENST00000363701 100 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RN7SKP227-201ENST00000364445 330 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 Y_RNA.813-201ENST00000364639 102 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNU6-1029P-201ENST00000384109 107 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNU6-903P-201ENST00000391270 109 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL356967.1-201ENST00000406305 431 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RN7SKP263-201ENST00000411194 309 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RN7SKP53-201ENST00000411337 315 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 EEF1A1P40-201ENST00000412883 573 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC068533.1-201ENST00000418542 415 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 DBIP2-201ENST00000419076 262 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC018630.2-202ENST00000422992 927 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RPL35AP12-201ENST00000425362 338 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 DUTP6-201ENST00000425573 462 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 SRIP2-201ENST00000428470 166 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RPL23AP69-201ENST00000431134 458 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC004866.2-201ENST00000438285 481 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 MTCO3P45-201ENST00000443036 613 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RPS3AP46-201ENST00000448352 682 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL162389.1-201ENST00000449233 177 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC093278.1-201ENST00000494700 600 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC005921.1-201ENST00000510589 286 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNU4-29P-201ENST00000515943 174 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 SNORA70.18-201ENST00000516696 98 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RNA5SP503-201ENST00000517047 117 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 RANP9-201ENST00000519957 271 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC100870.1-201ENST00000522035 505 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AP005435.4-201ENST00000529514 284 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC243972.3-201ENST00000539655 198 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 GLYCAM1-201ENST00000546596 285 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 TRAV37-201ENST00000553906 342 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 NCAPGP2-201ENST00000557911 754 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AF038458.1-201ENST00000588406 262 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 VN1R85P-201ENST00000601587 426 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC012443.1-201ENST00000605605 231 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC099778.2-201ENST00000610904 211 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 XIST_intron.1-201ENST00000619444 68 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC015967.1-201ENST00000619893 476 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC022149.2-201ENST00000621061 203 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AL357559.1-201ENST00000622228 274 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 AC112487.2-201ENST00000637950 304 ntBASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP4Q8N3C7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLIP4Q8N3C7 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.25□□□□□ -1.89
CLIP4Q8N3C7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLIP4Q8N3C7 AC091152.2-201ENST00000591628 2569 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms