Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MIR15A-201ENST00000607334 83 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 AC004852.3-201ENST00000614131 326 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 TUG1_2.1-201ENST00000614234 87 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 AC006001.4-201ENST00000622243 395 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 CR392039.4-201ENST00000624968 501 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 AL596211.1-201ENST00000569873 2277 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 AC026951.1-201ENST00000559530 2459 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 OR9K1P-202ENST00000641111 3217 ntBASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
NPAS3Q8IXF0 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 Y_RNA.217-201ENST00000364214 105 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 RNU6-754P-201ENST00000391166 107 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 WARS2P1-201ENST00000429678 537 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 Z82188.1-201ENST00000436709 154 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 Z82210.1-201ENST00000440037 231 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 RPS26P56-201ENST00000444468 240 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 Y_RNA.641-201ENST00000459414 105 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 Y_RNA.797-201ENST00000515977 94 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 RN7SKP179-201ENST00000516126 217 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC022616.8-201ENST00000533569 253 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC022968.1-201ENST00000567372 442 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AC067852.3-201ENST00000589177 561 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AP001642.1-201ENST00000624727 2117 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 AL022311.1-201ENST00000623726 19416 ntBASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NPAS3Q8IXF0 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.21□□□□□ -1.57
NPAS3Q8IXF0 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NPAS3Q8IXF0 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
NPAS3Q8IXF0 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.21□□□□□ -1.57
NPAS3Q8IXF0 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
NPAS3Q8IXF0 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 MIR450A1-201ENST00000362262 91 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 RNU6-879P-201ENST00000364328 108 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 RNA5SP223-201ENST00000365174 120 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 SNORA2.3-201ENST00000383920 135 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 RNU6-76P-201ENST00000384060 104 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 U3.29-201ENST00000391296 212 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC234779.1-201ENST00000425910 285 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC127537.2-201ENST00000439258 465 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC005868.1-201ENST00000536421 331 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 NACAP3-201ENST00000552100 481 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 LRRC37A5P-203ENST00000580181 585 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 MIR6839-201ENST00000620425 113 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AL079305.1-201ENST00000623159 3008 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AC010266.2-201ENST00000564741 3255 ntBASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.21□□□□□ -1.58
NPAS3Q8IXF0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 RNU6-263P-201ENST00000363811 107 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 RNU6-275P-201ENST00000364910 107 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 SNORA62-201ENST00000365493 153 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 RNU6-1275P-201ENST00000391087 107 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 RNU6-460P-201ENST00000391158 108 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 RNU6-607P-201ENST00000411283 108 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 TBCAP2-201ENST00000416175 326 ntBASIC5.2□□□□□ -1.58
NPAS3Q8IXF0 AC063976.4-201ENST00000421971 163 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms