Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC0.85□□□□□ -2.27
USF3Q68DE3 NUTF2P8-201ENST00000604593 363 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AC090525.3-201ENST00000605601 189 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC0.85□□□□□ -2.27
USF3Q68DE3 AC097655.1-201ENST00000635075 318 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 RNU6-263P-201ENST00000363811 107 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
USF3Q68DE3 SNORA51.12-201ENST00000384448 134 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 MIR216A-201ENST00000385063 110 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AL500527.1-201ENST00000448532 255 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AC010099.1-201ENST00000455434 375 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC0.85□□□□□ -2.27
USF3Q68DE3 PCNAP1-201ENST00000505363 709 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC0.85□□□□□ -2.27
USF3Q68DE3 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC0.85□□□□□ -2.27
USF3Q68DE3 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC0.85□□□□□ -2.27
USF3Q68DE3 AC025918.2-201ENST00000558683 763 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 LINC00933-203ENST00000559812 219 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 MIR6857-201ENST00000613267 93 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 ICE2P2-201ENST00000483823 2787 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
USF3Q68DE3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
USF3Q68DE3 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 RNU6-666P-201ENST00000363499 107 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
USF3Q68DE3 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 MIR532-201ENST00000385025 91 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 RNU6-837P-201ENST00000391056 108 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 RPS15AP40-201ENST00000419621 391 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AC007560.1-201ENST00000426912 237 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 GDI2P2-201ENST00000445131 608 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AC021146.8-201ENST00000507455 733 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 AC016065.2-201ENST00000514530 444 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 RNU5F-8P-201ENST00000515941 111 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AP005902.1-201ENST00000521358 186 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.84□□□□□ -2.27
USF3Q68DE3 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.84□□□□□ -2.27
USF3Q68DE3 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AC092140.2-201ENST00000618027 521 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
USF3Q68DE3 UCA1.1-201ENST00000620952 75 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.84□□□□□ -2.27
USF3Q68DE3 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC0.84□□□□□ -2.27
USF3Q68DE3 AL049737.1-201ENST00000413920 1403 ntBASIC0.84□□□□□ -2.27
USF3Q68DE3 CIR1P3-201ENST00000405137 479 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 RNU2-41P-201ENST00000410991 178 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 snoU13.4-201ENST00000458916 104 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 AC093752.1-206ENST00000511823 336 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC0.84□□□□□ -2.28
USF3Q68DE3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.84□□□□□ -2.28
USF3Q68DE3 AC107214.2-201ENST00000608204 634 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 AC108706.1-201ENST00000611053 297 ntBASIC0.84□□□□□ -2.28
USF3Q68DE3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.28
USF3Q68DE3 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC123912.3-201ENST00000600907 1367 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
USF3Q68DE3 Y_RNA.178-201ENST00000363832 102 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 Y_RNA.251-201ENST00000364551 99 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 RNA5SP354-201ENST00000391247 136 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC092648.1-201ENST00000425870 423 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC112198.4-201ENST00000515450 351 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
USF3Q68DE3 EIF4EP5-201ENST00000528228 640 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 CR383656.8-201ENST00000549046 145 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 MIR3973-201ENST00000579824 107 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
USF3Q68DE3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
USF3Q68DE3 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.83□□□□□ -2.28
USF3Q68DE3 STAT4-203ENST00000409995 709 ntTSL 5 BASIC0.83□□□□□ -2.28
USF3Q68DE3 RNU6-920P-201ENST00000410926 92 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC0.83□□□□□ -2.28
USF3Q68DE3 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.83□□□□□ -2.28
USF3Q68DE3 COX6CP18-201ENST00000448769 222 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 RPL31P53-201ENST00000457065 348 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.83□□□□□ -2.28
USF3Q68DE3 SNORA31.16-201ENST00000516773 139 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 MIR4714-201ENST00000580728 77 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.83□□□□□ -2.28
USF3Q68DE3 AL109918.3-201ENST00000603072 338 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AL355812.1-201ENST00000603215 216 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 AL590095.2-201ENST00000604136 117 ntBASIC0.83□□□□□ -2.28
USF3Q68DE3 SNORA3A-201ENST00000364113 130 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 AL513475.1-201ENST00000406602 315 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms