Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC008739.2-201ENST00000597006 317 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 HSPE1P7-201ENST00000604681 321 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 BNIP3P7-201ENST00000605641 516 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 MIR6835-201ENST00000621552 64 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 Y_RNA.167-201ENST00000363735 109 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 CD24P4-201ENST00000382840 243 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 MTCYBP24-201ENST00000420387 1106 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 PGBD4P3-201ENST00000440731 581 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 SNORD97-201ENST00000459187 142 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 RN7SKP277-201ENST00000516895 283 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 RNU6-670P-201ENST00000364312 104 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 HNRNPDLP3-201ENST00000456745 380 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 PABPC1P3-201ENST00000469174 459 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 OR10V3P-201ENST00000525712 725 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 SYF2P1-201ENST00000550658 413 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 GAS5-AS1-201ENST00000602767 694 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 SNORD23.1-201ENST00000408212 104 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 RN7SKP158-201ENST00000410453 326 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC004022.2-201ENST00000413824 193 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 LINC01347-201ENST00000417964 355 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 GTF2IP12-201ENST00000456547 356 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC092470.1-201ENST00000546187 132 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AL133507.1-201ENST00000605269 557 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC106052.1-201ENST00000608029 497 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 AC009902.3-201ENST00000606235 2172 ntBASIC0.86□□□□□ -2.27
CHD9Q3L8U1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 RNU6-1235P-201ENST00000384559 107 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 MIR17-201ENST00000385012 84 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AL627224.1-201ENST00000448334 444 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 RNU6-498P-201ENST00000459468 107 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AL161734.1-201ENST00000609720 557 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 uc_338.9-201ENST00000617424 182 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 RNU6-1181P-201ENST00000384191 106 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AL139397.2-201ENST00000404529 772 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 SDCBPP1-201ENST00000440192 890 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 PSPHP1-201ENST00000450062 261 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AC234775.1-201ENST00000454247 670 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 SYPL1P1-201ENST00000473622 768 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AC016065.2-201ENST00000514530 444 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 SNORA48.9-201ENST00000516419 162 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AP004371.1-201ENST00000525240 214 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 AL132857.1-201ENST00000555180 708 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC0.85□□□□□ -2.27
CHD9Q3L8U1 RNU6-105P-201ENST00000363909 104 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 RPL7P30-201ENST00000420888 709 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC099548.1-201ENST00000421443 426 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 PGBD4P6-201ENST00000421501 610 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC006548.1-201ENST00000427470 102 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 MTND2P26-201ENST00000528255 1029 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC079148.1-201ENST00000565944 819 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 FAM60CP-201ENST00000591086 664 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC093838.1-201ENST00000613014 469 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AC245884.12-201ENST00000615364 59 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AP003122.6-201ENST00000623831 495 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 CR381572.1-201ENST00000625098 102 ntBASIC0.84□□□□□ -2.27
CHD9Q3L8U1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
CHD9Q3L8U1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 Y_RNA.412-201ENST00000384001 104 ntBASIC0.84□□□□□ -2.28
CHD9Q3L8U1 RFESDP1-201ENST00000422350 461 ntBASIC0.84□□□□□ -2.28
CHD9Q3L8U1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 AC025768.1-201ENST00000510057 267 ntBASIC0.84□□□□□ -2.28
CHD9Q3L8U1 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.84□□□□□ -2.28
CHD9Q3L8U1 RNU6-1077P-201ENST00000410506 102 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 RNA5SP492-201ENST00000411330 114 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 FCF1P2-201ENST00000415284 583 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 RPL27AP8-201ENST00000424277 446 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms