Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL121576.1-201ENST00000556055 276 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC007687.1-201ENST00000602704 304 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 MIR1302-2-201ENST00000607096 138 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AL355365.1-201ENST00000616480 294 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC018529.3-201ENST00000624212 2254 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD9P28356 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HOXD9P28356 FAM35DP-201ENST00000323387 2712 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD9P28356 RNU6-903P-201ENST00000391270 109 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD9P28356 PTMAP5-201ENST00000393073 333 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RNU2-29P-201ENST00000410423 189 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RNU2-39P-201ENST00000410604 198 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RN7SKP140-201ENST00000411196 284 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 OR1AA1P-201ENST00000419597 916 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 BX842559.1-201ENST00000419615 532 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC006989.1-201ENST00000427212 131 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RPL36AP6-201ENST00000435770 321 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RPL35AP22-201ENST00000436855 335 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXD9P28356 RNU6-329P-201ENST00000459618 107 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RPL9P32-201ENST00000464118 620 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 MRPS17P3-201ENST00000465453 385 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RN7SL594P-201ENST00000470590 287 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXD9P28356 ST13P14-201ENST00000474095 734 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RPL23AP11-201ENST00000475260 469 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RPL23AP55-201ENST00000498163 452 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC116562.3-201ENST00000506136 177 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC103851.1-201ENST00000506833 274 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RNU4-29P-201ENST00000515943 174 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 Y_RNA.691-201ENST00000516611 103 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 RNU6-798P-201ENST00000516912 103 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD9P28356 AC068587.5-201ENST00000528506 175 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 AL133271.1-201ENST00000538229 291 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 HPRT1P3-201ENST00000539521 576 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD9P28356 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD9P28356 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD9P28356 AL355375.2-201ENST00000574825 175 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD9P28356 AC005498.1-201ENST00000592125 465 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC243960.4-201ENST00000600532 288 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AC093838.1-201ENST00000613014 469 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 uc_338.11-201ENST00000619132 160 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 AL160413.1-201ENST00000622780 310 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD9P28356 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD9P28356 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
HOXD9P28356 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD9P28356 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.6□□□□□ -1.83
HOXD9P28356 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD9P28356 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD9P28356 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD9P28356 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 OTUD4P1-201ENST00000237841 3067 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD9P28356 AC073343.1-201ENST00000328239 651 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD9P28356 RNU6-38P-201ENST00000384085 107 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 RNU2-37P-201ENST00000410695 177 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD9P28356 AL354751.2-201ENST00000415471 210 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD9P28356 VDAC1P3-201ENST00000434069 851 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD9P28356 RPS24P6-201ENST00000452670 400 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AC233279.1-201ENST00000455300 423 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AC007967.1-201ENST00000455422 1159 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 RNU6-333P-201ENST00000459117 107 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AC007547.1-201ENST00000462177 490 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC004062.1-201ENST00000509926 645 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 HMGB1P41-201ENST00000520234 440 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD9P28356 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXD9P28356 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXD9P28356 MIR4742-201ENST00000581069 85 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 MIR4424-201ENST00000585257 86 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC113139.1-201ENST00000605049 239 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms