Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RPS7P9-201ENST00000414704 586 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 PABPC1P3-201ENST00000469174 459 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 NDUFB4P2-201ENST00000509515 391 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC104108.1-201ENST00000509930 412 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU6-202P-201ENST00000515998 96 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AP005902.1-201ENST00000521358 186 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 MIR4287-201ENST00000579398 78 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AL589994.2-201ENST00000621124 579 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 MIR517C-201ENST00000385103 95 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 HMGB1P9-201ENST00000429856 646 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC090774.1-201ENST00000435925 246 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC002542.1-201ENST00000440683 193 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 RNU7-95P-201ENST00000459222 64 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC104685.1-201ENST00000502445 371 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 SCARNA17.1-201ENST00000516211 143 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 SCARNA17.2-201ENST00000516334 143 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 HMGB1P14-201ENST00000557424 591 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC015688.2-201ENST00000584523 262 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 HMGN2P15-201ENST00000585707 270 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC005498.1-201ENST00000592125 465 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AL355877.2-201ENST00000603670 358 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 DUXAP11-201ENST00000603858 526 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC004852.3-201ENST00000614131 326 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 SCARNA17.4-201ENST00000614296 143 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 MIR7111-201ENST00000619751 72 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN3AQ9NY46 GDI2P1-201ENST00000429312 1336 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 MTCO1P23-201ENST00000415223 1526 ntBASIC1.41□□□□□ -2.18
SCN3AQ9NY46 RNU6-796P-201ENST00000391086 107 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 RNU6-174P-201ENST00000410406 106 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 FCF1P2-201ENST00000415284 583 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 TPTE2P1-204ENST00000435256 593 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 RPL23AP76-201ENST00000441860 458 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 RPS15AP36-201ENST00000492022 382 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 VN1R80P-201ENST00000597126 338 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 AC011330.2-201ENST00000621680 635 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.4□□□□□ -2.18
SCN3AQ9NY46 MTND5P11-201ENST00000511037 1812 ntBASIC1.4□□□□□ -2.18
SCN3AQ9NY46 ADAM3A-203ENST00000461344 2157 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 AC234064.1-201ENST00000436312 247 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 AC004383.1-201ENST00000438135 289 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 Z82210.1-201ENST00000440037 231 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 SNRPGP13-201ENST00000442212 177 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 RPL21P47-201ENST00000483696 477 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 COX7A2P2-201ENST00000505291 250 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 SNORD39.3-201ENST00000584451 71 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 RMST_10.1-201ENST00000616309 154 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 MIR6130-201ENST00000619419 109 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 AC091925.2-201ENST00000625059 256 ntBASIC1.4□□□□□ -2.19
SCN3AQ9NY46 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.4□□□□□ -2.19
SCN3AQ9NY46 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 RNU6-234P-201ENST00000365229 104 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 USP9YP19-201ENST00000412165 485 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 USP9YP13-201ENST00000417797 480 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 RAC1P7-201ENST00000445367 377 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MTATP6P7-201ENST00000453315 681 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 MTND3P4-201ENST00000453537 303 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 SCARNA11.3-201ENST00000517276 130 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC103833.1-201ENST00000517442 172 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN3AQ9NY46 LSM6P2-201ENST00000552208 177 ntBASIC1.39□□□□□ -2.19
SCN3AQ9NY46 AL161670.1-201ENST00000554348 137 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms