Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 Y_RNA.33-201ENST00000362591 102 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP513-201ENST00000364648 118 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 SNORD116-11-201ENST00000383882 92 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL360182.1-201ENST00000397433 468 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC018644.1-201ENST00000429934 551 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 PIGFP3-201ENST00000441918 722 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC010618.1-201ENST00000469924 477 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 UQCRHP4-201ENST00000471686 272 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC105137.1-201ENST00000484355 562 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 RN7SL691P-201ENST00000494487 301 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL592156.1-201ENST00000508758 304 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 RN7SKP122-201ENST00000515923 296 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP49-201ENST00000516450 115 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 MTND6P33-201ENST00000571794 183 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC023575.1-201ENST00000580510 358 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 MIR3939-201ENST00000582614 106 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 POLR3GP2-201ENST00000588366 668 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC016727.1-205ENST00000605437 569 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AL138721.1-201ENST00000616756 179 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC008013.2-202ENST00000637965 364 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 AC099654.10-201ENST00000640395 161 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 OR52H1-202ENST00000641796 1061 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 LINC02471-203ENST00000641941 4752 ntBASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
TRIM39Q9HCM9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP502-201ENST00000362694 119 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNU6-562P-201ENST00000362731 107 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNU1-14P-201ENST00000362759 152 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNU6-266P-201ENST00000364225 107 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC068538.1-201ENST00000376856 336 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNU6-214P-201ENST00000384130 107 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RNU6-1179P-201ENST00000384667 107 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RN7SKP158-201ENST00000410453 326 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RBMY1KP-201ENST00000423480 476 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC007677.1-201ENST00000445757 515 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 NUTF2P3-201ENST00000448540 384 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 SNORD19B-201ENST00000459623 84 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RN7SL385P-201ENST00000468873 276 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RPL7P5-201ENST00000471472 736 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RPS27P27-201ENST00000498779 255 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 SUMO2P6-201ENST00000505273 288 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC008526.1-201ENST00000509149 338 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC008958.1-201ENST00000511047 682 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 RN7SKP24-201ENST00000515888 284 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 COPS8P3-201ENST00000526024 482 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 HPRT1P3-201ENST00000539521 576 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 TRAV28-201ENST00000557548 323 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL133255.1-201ENST00000606374 441 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC064836.2-201ENST00000609491 462 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL133215.3-201ENST00000609801 448 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 FAM27D1-201ENST00000612308 341 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 MIR6716-201ENST00000613413 80 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL138726.1-201ENST00000614873 333 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL445567.2-201ENST00000618935 498 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AL031601.2-202ENST00000622650 282 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 AC019278.1-201ENST00000623516 479 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 MTND4P23-201ENST00000447723 1363 ntBASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRIM39Q9HCM9 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC007785.2-201ENST00000598627 1916 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms