Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC068790.6-201ENST00000602558 258 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 Z84480.1-201ENST00000605131 311 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AP002360.4-201ENST00000606980 481 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AC087241.4-201ENST00000612441 480 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 AL589994.2-201ENST00000621124 579 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 OR5AK4P-201ENST00000635912 903 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIR4275-201ENST00000636486 87 ntBASIC2.85□□□□□ -1.95
NKX3-1Q99801 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.85□□□□□ -1.95
NKX3-1Q99801 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
NKX3-1Q99801 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
NKX3-1Q99801 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
NKX3-1Q99801 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
NKX3-1Q99801 RNY1P12-201ENST00000364251 105 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 Y_RNA.516-201ENST00000384541 124 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 MIR1-2-201ENST00000384961 85 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 MIR34B-201ENST00000385076 84 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 GSTA9P-201ENST00000406231 611 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
NKX3-1Q99801 SDCBPP3-201ENST00000419629 891 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 C8orf59P1-201ENST00000429930 303 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 CST9LP2-201ENST00000437612 320 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 SSXP4-201ENST00000451349 245 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 RPL9P6-201ENST00000492764 598 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 RNU6-1092P-201ENST00000516955 87 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC068657.1-201ENST00000520807 306 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 AL391646.1-201ENST00000603860 190 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC007363.1-201ENST00000604736 620 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC012468.1-201ENST00000604888 430 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC012557.2-201ENST00000605919 418 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC013562.2-201ENST00000611632 603 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AC091903.1-201ENST00000624322 454 ntBASIC2.84□□□□□ -1.95
NKX3-1Q99801 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
NKX3-1Q99801 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.84□□□□□ -1.95
NKX3-1Q99801 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
NKX3-1Q99801 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
NKX3-1Q99801 AC103988.1-201ENST00000566382 2177 ntBASIC2.84□□□□□ -1.96
NKX3-1Q99801 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.84□□□□□ -1.96
NKX3-1Q99801 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
NKX3-1Q99801 AC008568.2-201ENST00000623862 2313 ntBASIC2.84□□□□□ -1.96
NKX3-1Q99801 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
NKX3-1Q99801 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 HSPE1P11-201ENST00000339579 310 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 Y_RNA.159-201ENST00000363674 87 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 Y_RNA.296-201ENST00000364930 108 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 RNU6-456P-201ENST00000384493 107 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 MIR558-201ENST00000384920 94 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 MIR183-201ENST00000384958 110 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 MIR325-201ENST00000385260 98 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 Z85995.1-201ENST00000415547 335 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 RAC1P6-201ENST00000423911 575 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 MTATP6P16-201ENST00000434543 526 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 HMGB3P12-201ENST00000438745 556 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC107401.1-201ENST00000503426 685 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 RNU7-51P-201ENST00000516560 62 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 RN7SKP258-201ENST00000517151 304 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AP001804.3-201ENST00000525146 880 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 OR5B19P-201ENST00000531766 928 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 7.2 ms