Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RN7SKP21-201ENST00000516503 220 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 RNU6-579P-201ENST00000516879 102 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 OR5B10P-201ENST00000532869 642 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AL138976.2-201ENST00000563989 694 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AC005261.5-201ENST00000596280 355 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AC130324.3-201ENST00000614165 542 ntBASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP4Q8N3C7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 ASNSP3-201ENST00000451989 1306 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RNU6-188P-201ENST00000364207 107 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 Y_RNA.263-201ENST00000364659 114 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RNA5SP51-201ENST00000364750 119 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RNU6-805P-201ENST00000365643 106 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RNU6-767P-201ENST00000384132 107 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 SNORD37.1-201ENST00000390968 65 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 U3.39-201ENST00000408569 239 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RPS7P15-201ENST00000415804 584 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC114491.1-201ENST00000416095 246 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RPS29P15-201ENST00000458329 171 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 MRPS17P3-201ENST00000465453 385 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC010285.1-201ENST00000470580 392 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 PSMA2P1-201ENST00000526365 646 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 OR5AL2P-201ENST00000532185 920 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC018630.1-201ENST00000541376 925 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 MIR4775-201ENST00000581168 75 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 TUG1_2.1-201ENST00000614234 87 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AC243312.2-201ENST00000623340 601 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 FRG1KP-201ENST00000623592 341 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 AL359697.1-201ENST00000624879 587 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 MTND5P17-201ENST00000418405 1603 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 OR4G1P-203ENST00000641984 1631 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 DDX10P1-201ENST00000448545 1933 ntBASIC3.29□□□□□ -1.88
CLIP4Q8N3C7 RNU6-845P-201ENST00000362578 103 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 Y_RNA.142-201ENST00000363491 102 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RN7SKP280-201ENST00000364196 304 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 SNORA7.2-201ENST00000364446 145 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 SNORA73.2-201ENST00000364946 201 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 Y_RNA.356-201ENST00000365475 113 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 MT-TD-201ENST00000387419 68 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RPL17P36-201ENST00000420302 549 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC079780.1-201ENST00000428259 207 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AP000907.1-201ENST00000428428 510 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RPS24P6-201ENST00000452670 400 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 SNORD97-201ENST00000459187 142 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RPL38P4-201ENST00000502376 214 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 UBE2CP3-201ENST00000502715 450 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC004062.1-201ENST00000509926 645 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC026801.2-201ENST00000515352 425 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RN7SKP219-201ENST00000516825 296 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 IGHV3-76-201ENST00000522465 295 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC023050.3-201ENST00000541142 333 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC026333.2-201ENST00000542164 106 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC125611.2-201ENST00000551907 647 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC068831.8-201ENST00000620171 435 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AC007823.1-201ENST00000569932 1566 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AL365440.1-201ENST00000436135 2167 ntBASIC3.28□□□□□ -1.88
CLIP4Q8N3C7 AL079305.1-201ENST00000623159 3008 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 RNU1-75P-201ENST00000347264 129 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 RNU6-179P-201ENST00000363350 107 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 RNU6-960P-201ENST00000364056 120 ntBASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.27□□□□□ -1.89
CLIP4Q8N3C7 AL162578.1-201ENST00000406202 378 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms