Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 U3.45-201ENST00000607547 219 ntBASIC4.3□□□□□ -1.72
KRT40Q6A162 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.3□□□□□ -1.72
KRT40Q6A162 AC130324.3-201ENST00000614165 542 ntBASIC4.3□□□□□ -1.72
KRT40Q6A162 AL603758.1-201ENST00000618654 241 ntBASIC4.3□□□□□ -1.72
KRT40Q6A162 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
KRT40Q6A162 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
KRT40Q6A162 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.3□□□□□ -1.72
KRT40Q6A162 AL049555.1-201ENST00000562834 1933 ntBASIC4.3□□□□□ -1.72
KRT40Q6A162 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
KRT40Q6A162 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 MTND4P14-201ENST00000435799 1354 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.29□□□□□ -1.72
KRT40Q6A162 SNORA24.1-201ENST00000384401 135 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AL590004.1-201ENST00000405321 300 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AL606923.1-201ENST00000406616 190 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 RNA5SP56-201ENST00000410277 118 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 RNU2-29P-201ENST00000410423 189 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AL035423.1-201ENST00000420331 213 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AL159987.2-201ENST00000432754 307 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.29□□□□□ -1.72
KRT40Q6A162 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.29□□□□□ -1.72
KRT40Q6A162 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.29□□□□□ -1.72
KRT40Q6A162 PRPS1P1-201ENST00000445305 876 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC020550.1-201ENST00000447385 163 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 MTND1P18-201ENST00000448191 573 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.29□□□□□ -1.72
KRT40Q6A162 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.29□□□□□ -1.72
KRT40Q6A162 SNORD116-26-201ENST00000516006 96 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 RNA5SP503-201ENST00000517047 117 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.29□□□□□ -1.72
KRT40Q6A162 DEFB108D-201ENST00000527787 222 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC020661.2-201ENST00000560114 134 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 BNIP3P25-201ENST00000596023 559 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 RNU1-30P-201ENST00000606575 163 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 RMST_9.1-201ENST00000619945 193 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 MIR3651-201ENST00000630427 90 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 PABPC1P7-201ENST00000413177 1513 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 AC244517.1-201ENST00000606030 2086 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
KRT40Q6A162 AP004289.2-201ENST00000444413 1457 ntBASIC4.29□□□□□ -1.72
KRT40Q6A162 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.29□□□□□ -1.72
KRT40Q6A162 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.29□□□□□ -1.72
KRT40Q6A162 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
KRT40Q6A162 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.29□□□□□ -1.72
KRT40Q6A162 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
KRT40Q6A162 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
KRT40Q6A162 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
KRT40Q6A162 Y_RNA.100-201ENST00000363141 102 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 Y_RNA.301-201ENST00000364990 103 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 SNORD115-7-201ENST00000365306 82 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 RNU6-61P-201ENST00000365528 109 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.28□□□□□ -1.72
KRT40Q6A162 RNU6-516P-201ENST00000411381 104 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.28□□□□□ -1.72
KRT40Q6A162 RPS7P15-201ENST00000415804 584 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 USP9YP20-201ENST00000419224 558 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.28□□□□□ -1.72
KRT40Q6A162 AL138785.1-201ENST00000425821 331 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 RPS6P12-201ENST00000432491 726 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 NDUFA5P4-201ENST00000436704 385 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.28□□□□□ -1.72
KRT40Q6A162 GAPDHP27-201ENST00000447427 1020 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC115115.1-201ENST00000449927 248 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 SNORD19B-201ENST00000459623 84 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 RPL23AP11-201ENST00000475260 469 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC096576.1-201ENST00000489014 359 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 RPL23AP94-201ENST00000512518 302 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.28□□□□□ -1.72
KRT40Q6A162 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.28□□□□□ -1.72
KRT40Q6A162 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
KRT40Q6A162 POLR3GP2-201ENST00000588366 668 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 AC244505.7-201ENST00000599675 272 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC012443.1-201ENST00000605605 231 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 AC103710.3-201ENST00000608157 948 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC005344.1-201ENST00000613391 459 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
KRT40Q6A162 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
KRT40Q6A162 AC027287.1-201ENST00000553115 1453 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 PNPT1P2-201ENST00000456768 2050 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 MTND5P3-201ENST00000438536 1800 ntBASIC4.28□□□□□ -1.72
KRT40Q6A162 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms