Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU4-6P-201ENST00000410804 122 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 OR2AS1P-201ENST00000427827 319 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.18□□□□□ -1.74
USP39Q53GS9 AF228730.2-201ENST00000438784 848 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 MTND1P17-201ENST00000448961 204 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AP000873.1-201ENST00000463987 400 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.18□□□□□ -1.74
USP39Q53GS9 RPS27P27-201ENST00000498779 255 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.18□□□□□ -1.74
USP39Q53GS9 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.18□□□□□ -1.74
USP39Q53GS9 FTH1P9-201ENST00000513251 355 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 RNU6-256P-201ENST00000516747 97 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 RNA5SP503-201ENST00000517047 117 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 RNU6-1213P-201ENST00000517075 94 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.18□□□□□ -1.74
USP39Q53GS9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 AC069240.1-201ENST00000548774 375 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 AL109918.3-201ENST00000603072 338 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AC104662.1-201ENST00000604448 511 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AL390240.1-201ENST00000612950 384 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AL157817.1-201ENST00000614264 790 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AC008013.2-202ENST00000637965 364 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.18□□□□□ -1.74
USP39Q53GS9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 MTND5P30-201ENST00000452896 1731 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
USP39Q53GS9 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.17□□□□□ -1.74
USP39Q53GS9 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.17□□□□□ -1.74
USP39Q53GS9 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.17□□□□□ -1.74
USP39Q53GS9 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.17□□□□□ -1.74
USP39Q53GS9 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC007685.1-201ENST00000329806 452 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 RNA5SP387-201ENST00000364226 106 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 SET-203ENST00000372688 801 ntTSL 2 BASIC4.17□□□□□ -1.74
USP39Q53GS9 RNU6-1040P-201ENST00000383974 107 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 Y_RNA.476-201ENST00000384347 108 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 Y_RNA.527-201ENST00000384573 102 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 MIR7-3-201ENST00000384898 110 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 SNORD66.1-201ENST00000391230 76 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 RNU2-47P-201ENST00000410649 186 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 Y_RNA.646-201ENST00000410980 101 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AL691449.1-201ENST00000426570 421 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 PSMA6P3-201ENST00000428242 164 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 RPS26P56-201ENST00000444468 240 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.17□□□□□ -1.74
USP39Q53GS9 RPL7P52-201ENST00000449200 742 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.17□□□□□ -1.74
USP39Q53GS9 SNRPFP3-201ENST00000457792 225 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 snoU13.8-201ENST00000458890 104 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 U8.20-201ENST00000459445 131 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.17□□□□□ -1.74
USP39Q53GS9 HMGB1P41-201ENST00000520234 440 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.17□□□□□ -1.74
USP39Q53GS9 MTND4P7-201ENST00000523876 130 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AC011979.2-201ENST00000527568 352 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC022655.2-201ENST00000577280 318 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.17□□□□□ -1.74
USP39Q53GS9 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC023043.2-201ENST00000589678 1026 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 uc_338.32-201ENST00000615087 172 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.17□□□□□ -1.74
USP39Q53GS9 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 AC244517.1-201ENST00000606030 2086 ntBASIC4.17□□□□□ -1.74
USP39Q53GS9 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP39Q53GS9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.16□□□□□ -1.74
USP39Q53GS9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.16□□□□□ -1.74
USP39Q53GS9 Y_RNA.333-201ENST00000365274 102 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 RNU6-356P-201ENST00000384140 107 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 SNORA70E-201ENST00000384492 135 ntBASIC4.16□□□□□ -1.74
USP39Q53GS9 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP39Q53GS9 MIR1179-201ENST00000408703 91 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms