Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.5□□□□□ -1.85
PTPN9P43378 HMGB1P6-201ENST00000569046 646 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 SNORD39.4-201ENST00000620099 78 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AL356321.1-201ENST00000621360 228 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.5□□□□□ -1.85
PTPN9P43378 AL672296.1-201ENST00000427780 2158 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTPN9P43378 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
PTPN9P43378 MTND5P17-201ENST00000418405 1603 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
PTPN9P43378 Y_RNA.9-201ENST00000362354 101 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNA5SP119-201ENST00000362715 117 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNU6-1085P-201ENST00000363576 107 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNA5SP50-201ENST00000363731 107 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNU1-33P-201ENST00000364249 162 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 MIR490-201ENST00000384865 128 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 MIR514A1-201ENST00000385133 98 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNU2-39P-201ENST00000410604 198 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RNA5SP31-201ENST00000411144 127 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 NDUFB4P7-201ENST00000423198 363 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.49□□□□□ -1.85
PTPN9P43378 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.49□□□□□ -1.85
PTPN9P43378 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.49□□□□□ -1.85
PTPN9P43378 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.49□□□□□ -1.85
PTPN9P43378 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.49□□□□□ -1.85
PTPN9P43378 FGF7P6-202ENST00000451282 293 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.49□□□□□ -1.85
PTPN9P43378 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.49□□□□□ -1.85
PTPN9P43378 RN7SL293P-201ENST00000481765 281 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC009646.1-201ENST00000510455 318 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.49□□□□□ -1.85
PTPN9P43378 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 RN7SKP289-201ENST00000517244 295 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 OR4R1P-201ENST00000529879 463 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.49□□□□□ -1.85
PTPN9P43378 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.49□□□□□ -1.85
PTPN9P43378 AL157687.1-201ENST00000554853 619 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.49□□□□□ -1.85
PTPN9P43378 MIR4429-201ENST00000580105 73 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AP001029.3-201ENST00000588063 596 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AC174048.1-201ENST00000603389 144 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 AP001486.3-201ENST00000615334 372 ntBASIC3.49□□□□□ -1.85
PTPN9P43378 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.49□□□□□ -1.85
PTPN9P43378 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
PTPN9P43378 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PTPN9P43378 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.49□□□□□ -1.85
PTPN9P43378 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PTPN9P43378 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
PTPN9P43378 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 RNU6-1322P-201ENST00000364309 107 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 Y_RNA.367-201ENST00000365544 101 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 MIR23B-201ENST00000384832 97 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AL513331.1-201ENST00000411908 397 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AL451054.2-201ENST00000420896 202 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 RPL7L1P10-201ENST00000427790 463 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.48□□□□□ -1.85
PTPN9P43378 RPL23AP30-201ENST00000432419 501 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 BX679664.1-201ENST00000434429 253 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AC005019.1-201ENST00000436455 431 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AL356010.1-201ENST00000456364 102 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AC117522.1-201ENST00000509821 380 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 APOOP4-201ENST00000513530 597 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.48□□□□□ -1.85
PTPN9P43378 SNORA31.3-201ENST00000516029 96 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 RNU6-390P-201ENST00000516259 103 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 SNORA70.16-201ENST00000516390 95 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 Y_RNA.693-201ENST00000516641 110 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 NRON-201ENST00000517270 370 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.48□□□□□ -1.85
PTPN9P43378 AC027807.1-201ENST00000559921 996 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AP005205.1-201ENST00000563503 508 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.48□□□□□ -1.85
PTPN9P43378 AC015917.1-201ENST00000579654 510 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.48□□□□□ -1.85
PTPN9P43378 AC099778.2-201ENST00000610904 211 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 AL160394.1-201ENST00000624765 724 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
PTPN9P43378 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PTPN9P43378 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.48□□□□□ -1.85
PTPN9P43378 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.48□□□□□ -1.85
PTPN9P43378 AL021368.2-201ENST00000606125 5352 ntBASIC3.48□□□□□ -1.85
PTPN9P43378 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN9P43378 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.47□□□□□ -1.85
PTPN9P43378 AC007496.3-201ENST00000624987 3443 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTPN9P43378 RNU1-75P-201ENST00000347264 129 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 Y_RNA.372-201ENST00000365599 102 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 DEFB109C-201ENST00000382575 264 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 DEFB109B-201ENST00000382656 264 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 MIR454-201ENST00000390180 115 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 NDUFS5P1-201ENST00000405668 289 ntBASIC3.47□□□□□ -1.85
PTPN9P43378 AC093578.1-201ENST00000415219 368 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms