Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC110491.1-201ENST00000562191 2010 ntBASIC0.73□□□□□ -2.29
VCANP13611 MIR591-201ENST00000385290 95 ntBASIC0.73□□□□□ -2.29
VCANP13611 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.73□□□□□ -2.29
VCANP13611 AC013470.3-201ENST00000420252 1194 ntBASIC0.73□□□□□ -2.29
VCANP13611 NAP1L1P3-201ENST00000462291 880 ntBASIC0.73□□□□□ -2.29
VCANP13611 AC092754.2-201ENST00000463506 460 ntBASIC0.73□□□□□ -2.29
VCANP13611 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC0.73□□□□□ -2.29
VCANP13611 SNORA6-201ENST00000384033 151 ntBASIC0.73□□□□□ -2.29
VCANP13611 RNU6-39P-201ENST00000384344 107 ntBASIC0.73□□□□□ -2.29
VCANP13611 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.73□□□□□ -2.29
VCANP13611 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.73□□□□□ -2.29
VCANP13611 AC104685.1-201ENST00000502445 371 ntBASIC0.73□□□□□ -2.29
VCANP13611 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.73□□□□□ -2.29
VCANP13611 AC004812.1-201ENST00000540773 146 ntBASIC0.73□□□□□ -2.29
VCANP13611 MIR6718-201ENST00000616153 80 ntBASIC0.73□□□□□ -2.29
VCANP13611 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.72□□□□□ -2.29
VCANP13611 RPL17P49-201ENST00000443728 411 ntBASIC0.72□□□□□ -2.29
VCANP13611 AC098591.2-201ENST00000510152 315 ntBASIC0.72□□□□□ -2.29
VCANP13611 RNU2-44P-201ENST00000516795 194 ntBASIC0.72□□□□□ -2.29
VCANP13611 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.72□□□□□ -2.29
VCANP13611 RNA5SP368-201ENST00000364298 116 ntBASIC0.72□□□□□ -2.29
VCANP13611 ANAPC10P1-201ENST00000395991 556 ntBASIC0.72□□□□□ -2.29
VCANP13611 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC0.72□□□□□ -2.29
VCANP13611 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.72□□□□□ -2.29
VCANP13611 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.72□□□□□ -2.29
VCANP13611 SNORA4.3-201ENST00000365564 137 ntBASIC0.71□□□□□ -2.3
VCANP13611 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.71□□□□□ -2.3
VCANP13611 HSPE1P24-201ENST00000450782 238 ntBASIC0.71□□□□□ -2.3
VCANP13611 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.71□□□□□ -2.3
VCANP13611 OR5B19P-201ENST00000531766 928 ntBASIC0.71□□□□□ -2.3
VCANP13611 AC020658.4-201ENST00000613987 684 ntBASIC0.71□□□□□ -2.3
VCANP13611 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.71□□□□□ -2.3
VCANP13611 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.71□□□□□ -2.3
VCANP13611 RNU6-700P-201ENST00000391043 107 ntBASIC0.71□□□□□ -2.3
VCANP13611 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
VCANP13611 PGBD4P3-201ENST00000440731 581 ntBASIC0.71□□□□□ -2.3
VCANP13611 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.71□□□□□ -2.3
VCANP13611 SYF2P1-201ENST00000550658 413 ntBASIC0.71□□□□□ -2.3
VCANP13611 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.71□□□□□ -2.3
VCANP13611 MIR518A2-201ENST00000384966 87 ntBASIC0.71□□□□□ -2.3
VCANP13611 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.71□□□□□ -2.3
VCANP13611 PTENP1-201ENST00000447117 1215 ntBASIC0.71□□□□□ -2.3
VCANP13611 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.71□□□□□ -2.3
VCANP13611 Y_RNA.654-201ENST00000497848 106 ntBASIC0.71□□□□□ -2.3
VCANP13611 CASP1P1-201ENST00000526345 212 ntBASIC0.71□□□□□ -2.3
VCANP13611 CYP4A27P-201ENST00000567218 190 ntBASIC0.71□□□□□ -2.3
VCANP13611 HMGB1P24-202ENST00000615653 685 ntBASIC0.71□□□□□ -2.3
VCANP13611 VN1R42P-201ENST00000424651 344 ntBASIC0.7□□□□□ -2.3
VCANP13611 MTCO1P53-201ENST00000441633 699 ntBASIC0.7□□□□□ -2.3
VCANP13611 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
VCANP13611 AC091057.2-201ENST00000602594 792 ntBASIC0.7□□□□□ -2.3
VCANP13611 AC243829.3-201ENST00000622177 108 ntBASIC0.7□□□□□ -2.3
VCANP13611 MTCO1P23-201ENST00000415223 1526 ntBASIC0.7□□□□□ -2.3
VCANP13611 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.7□□□□□ -2.3
VCANP13611 Y_RNA.25-201ENST00000362528 102 ntBASIC0.7□□□□□ -2.3
VCANP13611 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.7□□□□□ -2.3
VCANP13611 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.7□□□□□ -2.3
VCANP13611 AC005741.1-201ENST00000511094 432 ntBASIC0.7□□□□□ -2.3
VCANP13611 AP003484.1-201ENST00000530974 250 ntBASIC0.7□□□□□ -2.3
VCANP13611 RNA5SP63-201ENST00000391225 112 ntBASIC0.69□□□□□ -2.3
VCANP13611 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC0.69□□□□□ -2.3
VCANP13611 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC0.69□□□□□ -2.3
VCANP13611 MIR6840-201ENST00000611937 71 ntBASIC0.69□□□□□ -2.3
VCANP13611 PCNAP1-201ENST00000505363 709 ntBASIC0.69□□□□□ -2.3
VCANP13611 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.69□□□□□ -2.3
VCANP13611 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC0.69□□□□□ -2.3
VCANP13611 AC009902.3-201ENST00000606235 2172 ntBASIC0.69□□□□□ -2.3
VCANP13611 AC092648.1-201ENST00000425870 423 ntBASIC0.68□□□□□ -2.3
VCANP13611 AC117503.1-201ENST00000472241 394 ntBASIC0.68□□□□□ -2.3
VCANP13611 AC083923.1-201ENST00000523708 376 ntBASIC0.68□□□□□ -2.3
VCANP13611 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
VCANP13611 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC0.68□□□□□ -2.3
VCANP13611 AC007792.1-201ENST00000623023 402 ntBASIC0.68□□□□□ -2.3
VCANP13611 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC0.68□□□□□ -2.3
VCANP13611 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
VCANP13611 Z82195.2-201ENST00000612348 18351 ntBASIC0.68□□□□□ -2.3
VCANP13611 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.68□□□□□ -2.3
VCANP13611 AL118508.4-201ENST00000624142 1176 ntBASIC0.68□□□□□ -2.3
VCANP13611 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
VCANP13611 AL606489.2-201ENST00000433886 234 ntBASIC0.68□□□□□ -2.3
VCANP13611 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC0.68□□□□□ -2.3
VCANP13611 AC239860.2-201ENST00000525886 270 ntBASIC0.68□□□□□ -2.3
VCANP13611 AL133393.1-201ENST00000603277 287 ntBASIC0.68□□□□□ -2.3
VCANP13611 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
VCANP13611 ZNF90P2-204ENST00000419323 1075 ntBASIC0.67□□□□□ -2.3
VCANP13611 HMGN2P10-201ENST00000448085 265 ntBASIC0.67□□□□□ -2.3
VCANP13611 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.67□□□□□ -2.3
VCANP13611 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.67□□□□□ -2.3
VCANP13611 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.67□□□□□ -2.3
VCANP13611 AC024060.1-201ENST00000607052 494 ntBASIC0.67□□□□□ -2.3
VCANP13611 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.67□□□□□ -2.3
VCANP13611 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.67□□□□□ -2.3
VCANP13611 RNA5SP492-201ENST00000411330 114 ntBASIC0.67□□□□□ -2.3
VCANP13611 UBE2FP3-201ENST00000436366 524 ntBASIC0.67□□□□□ -2.3
VCANP13611 AC010099.1-201ENST00000455434 375 ntBASIC0.67□□□□□ -2.3
VCANP13611 SUMO2P2-201ENST00000456482 255 ntBASIC0.67□□□□□ -2.3
VCANP13611 SUMO2P4-201ENST00000504193 276 ntBASIC0.67□□□□□ -2.3
VCANP13611 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.67□□□□□ -2.3
VCANP13611 AC079780.1-201ENST00000428259 207 ntBASIC0.66□□□□□ -2.3
VCANP13611 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms