Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SNRPEP9-201ENST00000436794 238 ntBASIC2.98□□□□□ -1.93
SIX3O95343 USP9YP12-201ENST00000450481 570 ntBASIC2.98□□□□□ -1.93
SIX3O95343 CECR9-201ENST00000453421 199 ntBASIC2.98□□□□□ -1.93
SIX3O95343 KATNBL1P6-201ENST00000453433 915 ntBASIC2.98□□□□□ -1.93
SIX3O95343 SNORD97-201ENST00000459187 142 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC087588.1-201ENST00000462203 316 ntBASIC2.98□□□□□ -1.93
SIX3O95343 RBM43P1-201ENST00000476891 1081 ntBASIC2.98□□□□□ -1.93
SIX3O95343 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.98□□□□□ -1.93
SIX3O95343 AC109925.1-201ENST00000478069 331 ntBASIC2.98□□□□□ -1.93
SIX3O95343 RN7SL432P-201ENST00000484057 298 ntBASIC2.98□□□□□ -1.93
SIX3O95343 RN7SL283P-201ENST00000489055 303 ntBASIC2.98□□□□□ -1.93
SIX3O95343 YWHAEP4-201ENST00000505390 198 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
SIX3O95343 AC114786.4-201ENST00000508771 728 ntBASIC2.98□□□□□ -1.93
SIX3O95343 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
SIX3O95343 RN7SKP282-201ENST00000516824 299 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.98□□□□□ -1.93
SIX3O95343 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.98□□□□□ -1.93
SIX3O95343 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SIX3O95343 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
SIX3O95343 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
SIX3O95343 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.98□□□□□ -1.93
SIX3O95343 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.98□□□□□ -1.93
SIX3O95343 HMGN2P15-201ENST00000585707 270 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
SIX3O95343 AP000860.1-201ENST00000605250 559 ntBASIC2.98□□□□□ -1.93
SIX3O95343 Z99289.3-201ENST00000605586 594 ntBASIC2.98□□□□□ -1.93
SIX3O95343 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SIX3O95343 uc_338.12-201ENST00000616344 181 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC007318.2-201ENST00000620999 243 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC099506.2-201ENST00000623074 221 ntBASIC2.98□□□□□ -1.93
SIX3O95343 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.98□□□□□ -1.93
SIX3O95343 AP003399.1-201ENST00000637534 361 ntBASIC2.98□□□□□ -1.93
SIX3O95343 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.98□□□□□ -1.93
SIX3O95343 AC008669.1-201ENST00000565823 2178 ntBASIC2.98□□□□□ -1.93
SIX3O95343 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
SIX3O95343 RNU6-512P-201ENST00000364438 103 ntBASIC2.97□□□□□ -1.93
SIX3O95343 Y_RNA.238-201ENST00000364441 102 ntBASIC2.97□□□□□ -1.93
SIX3O95343 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.97□□□□□ -1.93
SIX3O95343 RNU5E-5P-201ENST00000365379 116 ntBASIC2.97□□□□□ -1.93
SIX3O95343 RNU2-68P-201ENST00000410878 191 ntBASIC2.97□□□□□ -1.93
SIX3O95343 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 Z99497.1-201ENST00000421282 135 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC019097.1-201ENST00000424783 735 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.97□□□□□ -1.93
SIX3O95343 RPL36AP53-201ENST00000432891 316 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AL714022.1-201ENST00000439897 151 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 RPS15AP27-201ENST00000449183 343 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 RPL27AP5-201ENST00000469428 449 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC116337.2-201ENST00000477662 156 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC098862.1-201ENST00000504991 413 ntBASIC2.97□□□□□ -1.93
SIX3O95343 SUMO2P6-201ENST00000505273 288 ntBASIC2.97□□□□□ -1.93
SIX3O95343 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.97□□□□□ -1.93
SIX3O95343 RN7SKP43-201ENST00000516173 320 ntBASIC2.97□□□□□ -1.93
SIX3O95343 RNU2-10P-201ENST00000516375 211 ntBASIC2.97□□□□□ -1.93
SIX3O95343 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.97□□□□□ -1.93
SIX3O95343 AC106038.2-201ENST00000520706 568 ntBASIC2.97□□□□□ -1.93
SIX3O95343 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.97□□□□□ -1.93
SIX3O95343 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.97□□□□□ -1.93
SIX3O95343 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 AL391261.3-201ENST00000557194 520 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
SIX3O95343 AL451007.1-201ENST00000595491 289 ntBASIC2.97□□□□□ -1.93
SIX3O95343 DUXAP4-201ENST00000603046 613 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC098826.3-201ENST00000603823 466 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC004832.5-201ENST00000608677 401 ntBASIC2.97□□□□□ -1.93
SIX3O95343 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 AL391813.2-201ENST00000609113 322 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC012360.2-201ENST00000609349 391 ntBASIC2.97□□□□□ -1.93
SIX3O95343 AC034102.8-201ENST00000615146 484 ntBASIC2.97□□□□□ -1.93
SIX3O95343 MIR7112-201ENST00000616126 65 ntBASIC2.97□□□□□ -1.93
SIX3O95343 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 AL365361.1-201ENST00000566942 3481 ntBASIC2.97□□□□□ -1.93
SIX3O95343 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.97□□□□□ -1.93
SIX3O95343 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.97□□□□□ -1.93
SIX3O95343 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.93
SIX3O95343 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
SIX3O95343 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.96□□□□□ -1.94
SIX3O95343 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.96□□□□□ -1.94
SIX3O95343 MIR888-201ENST00000401186 77 ntBASIC2.96□□□□□ -1.94
SIX3O95343 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.96□□□□□ -1.94
SIX3O95343 AL021407.1-201ENST00000404531 386 ntBASIC2.96□□□□□ -1.94
SIX3O95343 RNA5SP274-201ENST00000410484 108 ntBASIC2.96□□□□□ -1.94
SIX3O95343 RPS6P15-201ENST00000431996 751 ntBASIC2.96□□□□□ -1.94
SIX3O95343 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.96□□□□□ -1.94
SIX3O95343 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.96□□□□□ -1.94
SIX3O95343 RPL21P41-201ENST00000459863 264 ntBASIC2.96□□□□□ -1.94
SIX3O95343 MRPS17P3-201ENST00000465453 385 ntBASIC2.96□□□□□ -1.94
SIX3O95343 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.96□□□□□ -1.94
SIX3O95343 RN7SL633P-201ENST00000488974 297 ntBASIC2.96□□□□□ -1.94
SIX3O95343 AC010486.2-201ENST00000505572 483 ntBASIC2.96□□□□□ -1.94
SIX3O95343 AC009901.1-201ENST00000506703 541 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms