Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AP001002.2-201ENST00000625137 386 ntBASIC1.46□□□□□ -2.18
HMGB3O15347 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC1.46□□□□□ -2.18
HMGB3O15347 AC243829.7-201ENST00000633081 225 ntBASIC1.46□□□□□ -2.18
HMGB3O15347 AL356473.1-201ENST00000406203 1408 ntBASIC1.46□□□□□ -2.18
HMGB3O15347 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
HMGB3O15347 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
HMGB3O15347 RNU5E-8P-201ENST00000363502 116 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 RNU4-42P-201ENST00000364738 142 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 SNORA64-201ENST00000384674 134 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 NDUFS5P1-201ENST00000405668 289 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 NDUFS5P4-201ENST00000412983 318 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
HMGB3O15347 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
HMGB3O15347 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 HMGN1P5-201ENST00000448591 263 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.45□□□□□ -2.18
HMGB3O15347 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
HMGB3O15347 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 RNU6-551P-201ENST00000516661 103 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC1.45□□□□□ -2.18
HMGB3O15347 EIF4BP1-201ENST00000554881 351 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.45□□□□□ -2.18
HMGB3O15347 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 RPP40P2-201ENST00000603596 712 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.45□□□□□ -2.18
HMGB3O15347 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
HMGB3O15347 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.45□□□□□ -2.18
HMGB3O15347 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
HMGB3O15347 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
HMGB3O15347 SNORA23-201ENST00000365128 182 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 MIR217-201ENST00000384817 110 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.44□□□□□ -2.18
HMGB3O15347 RPS24P7-201ENST00000416921 246 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 PGBD4P6-201ENST00000421501 610 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 MTCO3P1-205ENST00000422088 832 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 FABP5P14-201ENST00000437273 393 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 RNFT1P2-201ENST00000443064 757 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGB3O15347 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGB3O15347 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.44□□□□□ -2.18
HMGB3O15347 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HMGB3O15347 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGB3O15347 AC096745.1-201ENST00000509945 370 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 SNORD19.2-201ENST00000516978 73 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.44□□□□□ -2.18
HMGB3O15347 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
HMGB3O15347 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.44□□□□□ -2.18
HMGB3O15347 AC233702.2-202ENST00000562547 291 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AC024619.4-201ENST00000580924 316 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.44□□□□□ -2.18
HMGB3O15347 uc_338.14-201ENST00000613162 166 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AL596245.1-201ENST00000618994 362 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 AL159972.1-201ENST00000625150 448 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 U2.21-201ENST00000637295 81 ntBASIC1.44□□□□□ -2.18
HMGB3O15347 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.44□□□□□ -2.18
HMGB3O15347 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HMGB3O15347 RNU6-486P-201ENST00000363116 107 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AL079342.1-201ENST00000401460 267 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AL356421.1-201ENST00000403255 413 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 RNU4-53P-201ENST00000410828 140 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 RNU6-575P-201ENST00000411326 105 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC244636.1-201ENST00000421152 228 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC246680.2-201ENST00000422106 389 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AL353729.1-201ENST00000425044 720 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 Z93242.1-201ENST00000427102 353 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGB3O15347 AC234064.1-201ENST00000436312 247 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC005297.2-201ENST00000450430 606 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 RPL21P47-201ENST00000483696 477 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 BOLA3P3-201ENST00000505182 232 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC091860.1-201ENST00000505723 432 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC006499.2-201ENST00000513470 337 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC114781.4-201ENST00000513707 639 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGB3O15347 AC107953.1-201ENST00000522216 297 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.43□□□□□ -2.18
HMGB3O15347 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGB3O15347 NACAP3-201ENST00000552100 481 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 DUXAP1-201ENST00000556632 463 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.43□□□□□ -2.18
HMGB3O15347 AL354943.1-201ENST00000572103 781 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC005951.2-201ENST00000576282 495 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC005261.5-201ENST00000596280 355 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AL078605.1-201ENST00000603529 500 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC126118.1-201ENST00000607744 628 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC103710.1-201ENST00000610003 901 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 VN1R9P-201ENST00000614184 867 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC012150.2-201ENST00000621300 544 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 YWHAEP7-203ENST00000622054 312 ntBASIC1.43□□□□□ -2.18
HMGB3O15347 AC109454.4-201ENST00000623411 649 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms