Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 POLD2P1-201ENST00000511220 997 ntBASIC13.67□□□□□ -0.22
COL7A1Q02388 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC13.67□□□□□ -0.22
COL7A1Q02388 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.67□□□□□ -0.22
COL7A1Q02388 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13.67□□□□□ -0.22
COL7A1Q02388 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.67□□□□□ -0.22
COL7A1Q02388 TERC-201ENST00000602385 541 ntBASIC13.67□□□□□ -0.22
COL7A1Q02388 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL7A1Q02388 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL7A1Q02388 LINC00265-3P-201ENST00000447588 903 ntBASIC13.66□□□□□ -0.22
COL7A1Q02388 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.66□□□□□ -0.22
COL7A1Q02388 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.66□□□□□ -0.22
COL7A1Q02388 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.66□□□□□ -0.22
COL7A1Q02388 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.66□□□□□ -0.22
COL7A1Q02388 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL7A1Q02388 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.66□□□□□ -0.22
COL7A1Q02388 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 AC104819.1-201ENST00000504587 486 ntBASIC13.66□□□□□ -0.22
COL7A1Q02388 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.66□□□□□ -0.22
COL7A1Q02388 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.66□□□□□ -0.22
COL7A1Q02388 AC079602.3-201ENST00000623931 403 ntBASIC13.66□□□□□ -0.22
COL7A1Q02388 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.66□□□□□ -0.22
COL7A1Q02388 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL7A1Q02388 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL7A1Q02388 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 AL035633.1-201ENST00000406139 838 ntBASIC13.65□□□□□ -0.22
COL7A1Q02388 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.65□□□□□ -0.22
COL7A1Q02388 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.65□□□□□ -0.22
COL7A1Q02388 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
COL7A1Q02388 AP001160.2-201ENST00000596071 487 ntBASIC13.65□□□□□ -0.22
COL7A1Q02388 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.65□□□□□ -0.22
COL7A1Q02388 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.65□□□□□ -0.22
COL7A1Q02388 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL7A1Q02388 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.65□□□□□ -0.22
COL7A1Q02388 MIR1233-2-201ENST00000408138 82 ntBASIC13.65□□□□□ -0.22
COL7A1Q02388 MIR1233-1-201ENST00000408722 82 ntBASIC13.65□□□□□ -0.22
COL7A1Q02388 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.65□□□□□ -0.22
COL7A1Q02388 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC13.65□□□□□ -0.22
COL7A1Q02388 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.65□□□□□ -0.22
COL7A1Q02388 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL7A1Q02388 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
COL7A1Q02388 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms