Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RNF4P78317 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RNF4P78317 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RNF4P78317 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RNF4P78317 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.66■□□□□ 0.42
RNF4P78317 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 SLC25A1P2-201ENST00000430693 912 ntBASIC17.66■□□□□ 0.42
RNF4P78317 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.66■□□□□ 0.42
RNF4P78317 CA15P1-201ENST00000481698 905 ntBASIC17.66■□□□□ 0.42
RNF4P78317 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.66■□□□□ 0.42
RNF4P78317 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.66■□□□□ 0.42
RNF4P78317 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.66■□□□□ 0.42
RNF4P78317 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.66■□□□□ 0.42
RNF4P78317 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
RNF4P78317 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.66■□□□□ 0.42
RNF4P78317 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RNF4P78317 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RNF4P78317 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.66■□□□□ 0.42
RNF4P78317 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RNF4P78317 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RNF4P78317 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RNF4P78317 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
RNF4P78317 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.65■□□□□ 0.42
RNF4P78317 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RNF4P78317 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RNF4P78317 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.65■□□□□ 0.42
RNF4P78317 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.65■□□□□ 0.42
RNF4P78317 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.65■□□□□ 0.42
RNF4P78317 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.65■□□□□ 0.42
RNF4P78317 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
RNF4P78317 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.65■□□□□ 0.42
RNF4P78317 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 KRT18P22-201ENST00000402024 1347 ntBASIC17.65■□□□□ 0.42
RNF4P78317 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RNF4P78317 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
RNF4P78317 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.64■□□□□ 0.42
RNF4P78317 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.64■□□□□ 0.41
RNF4P78317 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.64■□□□□ 0.41
RNF4P78317 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF4P78317 AC141586.3-201ENST00000562166 1838 ntBASIC17.64■□□□□ 0.41
RNF4P78317 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
RNF4P78317 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF4P78317 CCR12P-201ENST00000446203 998 ntBASIC17.64■□□□□ 0.41
RNF4P78317 AC128688.1-201ENST00000487626 519 ntBASIC17.64■□□□□ 0.41
RNF4P78317 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF4P78317 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
RNF4P78317 AC116562.4-202ENST00000641738 218 ntBASIC17.64■□□□□ 0.41
RNF4P78317 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.64■□□□□ 0.41
RNF4P78317 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RNF4P78317 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
RNF4P78317 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.63■□□□□ 0.41
RNF4P78317 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms