Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RNF40O75150 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
RNF40O75150 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF40O75150 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF40O75150 AC020763.4-201ENST00000623414 4170 ntBASIC20.55■□□□□ 0.88
RNF40O75150 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 FZD10-202ENST00000539839 3282 ntBASIC20.55■□□□□ 0.88
RNF40O75150 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
RNF40O75150 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 AL032819.2-201ENST00000624543 2162 ntBASIC20.54■□□□□ 0.88
RNF40O75150 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RNF40O75150 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF40O75150 PCDHB18P-201ENST00000524813 2368 ntBASIC20.54■□□□□ 0.88
RNF40O75150 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF40O75150 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RNF40O75150 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF40O75150 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF40O75150 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF40O75150 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RNF40O75150 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF40O75150 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.53■□□□□ 0.88
RNF40O75150 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF40O75150 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RNF40O75150 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF40O75150 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.52■□□□□ 0.88
RNF40O75150 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
RNF40O75150 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF40O75150 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
RNF40O75150 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.52■□□□□ 0.88
RNF40O75150 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.52■□□□□ 0.88
RNF40O75150 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.52■□□□□ 0.88
RNF40O75150 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.52■□□□□ 0.88
RNF40O75150 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.52■□□□□ 0.88
RNF40O75150 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
RNF40O75150 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF40O75150 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF40O75150 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF40O75150 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.52■□□□□ 0.87
RNF40O75150 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF40O75150 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF40O75150 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF40O75150 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms