Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RNU5A-1-201ENST00000362698 116 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RNU6-512P-201ENST00000364438 103 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.291-201ENST00000364886 113 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AL022722.2-201ENST00000402519 180 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 TBCAP2-201ENST00000416175 326 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AL358472.1-201ENST00000431295 329 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 TMSB4XP3-201ENST00000445144 114 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AC104164.2-201ENST00000496953 495 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 SEPT14P8-201ENST00000508026 178 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RNU7-175P-201ENST00000515915 61 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AP006245.2-201ENST00000522004 300 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 CASP1P1-201ENST00000526345 212 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 MIR4480-201ENST00000582492 71 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RPL23AP78-201ENST00000599928 470 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AL161798.1-201ENST00000604630 131 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 Mico1.1-201ENST00000611698 204 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AC091953.3-201ENST00000623220 236 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC090971.4-201ENST00000560291 1800 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC007785.2-201ENST00000598627 1916 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.199-201ENST00000364014 102 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 RNU6-384P-201ENST00000364900 104 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 RNA5SP113-201ENST00000410486 84 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AL627311.1-201ENST00000431514 115 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC013470.1-201ENST00000453438 462 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 COX6CP14-201ENST00000469580 174 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 RPL23AP45-201ENST00000476406 468 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 ENPP7P9-201ENST00000514456 627 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 RNA5SP471-201ENST00000516971 106 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.719-201ENST00000517156 106 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC005868.1-201ENST00000536421 331 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AP002392.1-201ENST00000537692 208 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC234771.5-201ENST00000600161 514 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 Z83818.1-201ENST00000603584 150 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AC019206.1-201ENST00000621938 425 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 AL365440.1-201ENST00000436135 2167 ntBASIC5.13□□□□□ -1.59
USP3Q9Y6I4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP3Q9Y6I4 SAMMSON-226ENST00000642089 1582 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 GVINP1-202ENST00000531871 7271 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 MIR411-201ENST00000362239 96 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 RNU6-227P-201ENST00000362865 103 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 RN7SKP227-201ENST00000364445 330 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SNORD14B-201ENST00000364533 90 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AL049745.1-201ENST00000433953 286 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC009963.2-201ENST00000453431 138 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC083982.1-201ENST00000485679 344 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 COX6B1P2-201ENST00000489624 230 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 IGLV2-34-201ENST00000490007 283 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SERF1AP1-201ENST00000514575 187 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SRGNP1-201ENST00000603392 451 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AL139395.1-201ENST00000603662 160 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AL391358.1-201ENST00000605342 190 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC015914.2-201ENST00000618167 288 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AL022401.1-201ENST00000619498 108 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AC097372.5-201ENST00000623665 376 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms