Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC083809.1-201ENST00000615051 472 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 AC024884.1-201ENST00000620583 399 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 AC091932.3-201ENST00000624223 323 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC020633.1-201ENST00000468439 2247 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC018529.3-201ENST00000624212 2254 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-905P-201ENST00000384434 107 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-880P-201ENST00000384526 107 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL391361.1-201ENST00000405580 489 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 Y_RNA.630-201ENST00000411370 108 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC138623.1-201ENST00000418060 216 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL035660.1-201ENST00000422041 222 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 RPL21P66-201ENST00000426566 466 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 CYCSP6-201ENST00000434498 302 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 ACA64.1-201ENST00000459171 127 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 SNORD125-201ENST00000459538 96 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC025458.1-201ENST00000506046 166 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-1061P-201ENST00000516530 99 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 RN7SKP277-201ENST00000516895 283 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC018448.1-201ENST00000552843 316 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL589674.2-201ENST00000604304 337 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AL355480.1-201ENST00000629041 99 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC241585.2-209ENST00000638217 143 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 AC025470.1-201ENST00000510053 2032 ntBASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS9D1Q9Y2B5 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 AC125336.1-201ENST00000508893 2827 ntBASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
VPS9D1Q9Y2B5 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.24-201ENST00000362508 103 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-105P-201ENST00000363909 104 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP433-201ENST00000364491 114 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RNU2-54P-201ENST00000410299 190 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RPS27AP12-201ENST00000429552 465 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RPS17P15-201ENST00000475609 349 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.685-201ENST00000516532 108 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 CYCSP23-201ENST00000519781 313 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AP004609.2-201ENST00000532177 190 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF192P1-203ENST00000565888 810 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AC010999.1-201ENST00000611856 324 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AL391903.3-201ENST00000612158 163 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AL391261.4-201ENST00000616012 481 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AL121890.5-201ENST00000620848 304 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 MIR1245B-201ENST00000636115 69 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 AC004076.2-201ENST00000620532 3323 ntBASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS9D1Q9Y2B5 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.329-201ENST00000365209 107 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.498-201ENST00000384460 102 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms