Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AL161616.1-201ENST00000611867 286 ntBASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.35□□□□□ -1.55
BRPF3Q9ULD4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 RNU6-1115P-201ENST00000362490 106 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 Y_RNA.133-201ENST00000363428 110 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 SNORD113.2-201ENST00000364166 89 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 RNU6-463P-201ENST00000384340 107 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 RNU6-45P-201ENST00000384471 107 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 HSPE1P8-201ENST00000406997 288 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AL358176.2-201ENST00000425769 204 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 RPL23AP93-201ENST00000440847 484 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC008264.1-201ENST00000447612 367 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AL359073.1-201ENST00000448036 403 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC073264.2-201ENST00000448886 166 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 MIR2114-201ENST00000516645 80 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 Y_RNA.708-201ENST00000516950 96 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 ERHP1-201ENST00000523006 310 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AP004371.1-201ENST00000525240 214 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AP001781.1-201ENST00000530977 207 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 OR5D17P-201ENST00000531492 978 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC012119.1-201ENST00000603184 222 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 HMGB1P50-201ENST00000605814 607 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 Z98200.1-201ENST00000607298 470 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 AC048347.1-201ENST00000624621 427 ntBASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.34□□□□□ -1.55
BRPF3Q9ULD4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.56
BRPF3Q9ULD4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.34□□□□□ -1.56
BRPF3Q9ULD4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
BRPF3Q9ULD4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC004925.1-201ENST00000624256 2706 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RNU6-335P-201ENST00000364563 113 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RNU6-1074P-201ENST00000383995 104 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RNU6-890P-201ENST00000384121 107 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RPS12P24-201ENST00000412619 387 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 MTATP6P4-201ENST00000427725 675 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 HMGB1P27-201ENST00000431429 603 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RPL37P6-201ENST00000460682 294 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC026801.1-201ENST00000497178 464 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 RNU6-1137P-201ENST00000517073 99 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC009902.1-201ENST00000519351 183 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC087854.1-201ENST00000519706 414 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 MIR4443-201ENST00000585052 53 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 BDH2P1-201ENST00000602288 736 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AL354984.3-201ENST00000604803 325 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 MIR15A-201ENST00000607334 83 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC009229.3-201ENST00000608056 282 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 AC083806.3-201ENST00000614016 455 ntBASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRPF3Q9ULD4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RNU6-1309P-201ENST00000363305 108 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RNU6-95P-201ENST00000384697 107 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RNU6-1106P-201ENST00000390845 107 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 Z98745.1-201ENST00000402553 494 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 HSPE1P26-201ENST00000405341 275 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RNU6-1050P-201ENST00000410388 107 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 BX842559.1-201ENST00000419615 532 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 HIGD1AP11-201ENST00000438361 280 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 RPL26P6-201ENST00000440913 438 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 AL359672.1-201ENST00000442302 409 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 PRDX3P3-201ENST00000447765 522 ntBASIC5.32□□□□□ -1.56
BRPF3Q9ULD4 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms