Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC006499.2-201ENST00000513470 337 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU6-416P-201ENST00000516265 103 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 ARL2BPP5-201ENST00000523141 481 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AP003066.2-201ENST00000529375 555 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 NIFKP8-201ENST00000560500 874 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 MTCO1P40-201ENST00000574371 625 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 FAM60BP-201ENST00000578364 658 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AP002906.1-201ENST00000603405 233 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL031176.1-201ENST00000604554 466 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 BX248123.2-201ENST00000606318 124 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AP000238.1-201ENST00000608759 426 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL512506.2-201ENST00000624472 458 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU6-1155P-201ENST00000363554 107 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU1-42P-201ENST00000364033 160 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU6-217P-201ENST00000384164 104 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 U8.10-201ENST00000384260 133 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL513475.1-201ENST00000406602 315 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU2-15P-201ENST00000410692 191 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU4-27P-201ENST00000410889 139 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 PAICSP7-201ENST00000419829 962 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL356867.1-201ENST00000429623 299 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC109464.2-201ENST00000510242 943 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 MTCYBP27-201ENST00000555160 670 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 MIR3609-201ENST00000582661 80 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC021749.1-201ENST00000604322 607 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL512643.1-201ENST00000635735 524 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 ZNF849P-201ENST00000594711 1566 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 MIR325-201ENST00000385260 98 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AL023807.1-201ENST00000407932 359 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AP1B1P2-201ENST00000416196 106 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AL354695.1-201ENST00000427935 228 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC124916.1-201ENST00000444020 547 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 BX322784.1-201ENST00000455793 1077 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 MTND4LP3-201ENST00000468320 276 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC147055.4-201ENST00000504399 745 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC108729.3-201ENST00000513484 108 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 RNU2-19P-201ENST00000517288 84 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC011260.1-201ENST00000578420 472 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 OR10AB1P-201ENST00000609613 938 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 MTND2P41-201ENST00000637599 773 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.43□□□□□ -2.18
SCN3AQ9NY46 MTCO1P4-201ENST00000520516 1409 ntBASIC1.43□□□□□ -2.18
SCN3AQ9NY46 AC016716.1-201ENST00000265882 708 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU6-60P-201ENST00000364792 103 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU1-52P-201ENST00000384190 164 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RPL31P63-201ENST00000422565 375 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 PNRC2P1-201ENST00000423940 420 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 IPO7P1-201ENST00000442031 636 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AL360221.1-201ENST00000445989 335 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 PMCHL2-203ENST00000457791 237 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 OR9N1P-202ENST00000494289 481 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU6-1256P-201ENST00000516539 103 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 SNORA31.25-201ENST00000517242 134 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU1-104P-201ENST00000517280 175 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC007229.1-201ENST00000590455 412 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC079597.1-201ENST00000624306 508 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 MIR7157-201ENST00000635801 60 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 AC011477.1-204ENST00000623416 1325 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU6-220P-201ENST00000390919 107 ntBASIC1.42□□□□□ -2.18
SCN3AQ9NY46 RNU2-43P-201ENST00000410306 190 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms