Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 RNU1-35P-201ENST00000362782 153 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 SNORA68.1-201ENST00000364537 132 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 MIR512-1-201ENST00000384913 84 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AL360182.1-201ENST00000397433 468 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 MIR1305-201ENST00000408300 86 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 USP9YP26-201ENST00000421008 661 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC244035.1-201ENST00000430042 390 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 HSFY7P-201ENST00000432672 318 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 SNRPEP9-201ENST00000436794 238 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 HSFY8P-201ENST00000437934 318 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 HSFY5P-201ENST00000453726 309 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 RNU6-237P-201ENST00000515985 71 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 RNA5SP471-201ENST00000516971 106 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC068587.4-201ENST00000533893 186 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC068790.3-201ENST00000602988 553 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC004805.2-201ENST00000605382 482 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC097468.3-201ENST00000607956 456 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC007349.4-201ENST00000608114 532 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 AC245517.5-201ENST00000611529 162 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 MTND5P33-201ENST00000571250 1450 ntBASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.81□□□□□ -1.96
HDDC3Q8N4P3 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MIR19A-201ENST00000384878 82 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MIR34A-201ENST00000385130 110 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AL138827.1-201ENST00000402666 306 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AL513475.1-201ENST00000406602 315 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MTCO2P8-201ENST00000412213 658 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC093151.1-201ENST00000427711 313 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC010153.1-201ENST00000432862 727 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC010095.1-201ENST00000443543 144 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 FDX1P2-201ENST00000450769 375 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC104685.1-201ENST00000502445 371 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AIG1P1-201ENST00000503376 148 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 RNU4-29P-201ENST00000515943 174 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 SNORA31.18-201ENST00000517043 134 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 HPRT1P3-201ENST00000539521 576 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MIR3117-201ENST00000584034 78 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 BNIP3P10-201ENST00000605360 577 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC034102.8-201ENST00000615146 484 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 SNHG22-203ENST00000617833 660 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC084035.1-201ENST00000634543 607 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 AC103706.2-201ENST00000638080 240 ntBASIC2.8□□□□□ -1.96
HDDC3Q8N4P3 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC108206.1-201ENST00000570186 4159 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RPL21P132-201ENST00000331267 462 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RNU1-112P-201ENST00000364401 164 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RN7SKP226-201ENST00000364912 300 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 MIR9-1-201ENST00000385198 89 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RNA5SP344-201ENST00000411081 104 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 PIGPP2-201ENST00000411569 458 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC023141.4-201ENST00000412031 328 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 YWHAZP7-201ENST00000436906 631 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 RPL21P41-201ENST00000459863 264 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC105185.1-201ENST00000518705 535 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms