Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
DEPDC4Q8N2C3 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 OR1L6-202ENST00000373684 1044 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 Y_RNA.462-201ENST00000384268 102 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AL603910.2-201ENST00000407268 136 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 MIR548M-201ENST00000408260 86 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 U3.37-201ENST00000408528 213 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RN7SKP286-201ENST00000410894 299 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AL358453.1-201ENST00000422522 250 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RPL36AP39-201ENST00000445859 318 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 snoU13.30-201ENST00000458951 104 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RN7SL515P-201ENST00000463999 297 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AC004980.4-201ENST00000513375 203 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RNU6-1338P-201ENST00000516328 91 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RNU6-1012P-201ENST00000516606 109 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 DEFB108E-201ENST00000524692 240 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 HMGN2P36-201ENST00000529541 409 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AC130289.1-201ENST00000577321 73 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 MIR4782-201ENST00000577987 79 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 MIR4311-201ENST00000580794 100 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 AC024153.1-201ENST00000603103 365 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 RNF138P2-201ENST00000603490 592 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 SCARNA4-201ENST00000629045 128 ntBASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
DEPDC4Q8N2C3 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.09□□□□□ -1.6
DEPDC4Q8N2C3 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.09□□□□□ -1.6
DEPDC4Q8N2C3 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MARK2P15-201ENST00000432204 2186 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 RNU6-280P-201ENST00000364145 104 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MIR143-201ENST00000385300 106 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 SNORD78.2-201ENST00000391076 69 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 RNA5SP31-201ENST00000411144 127 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 RPL19P16-201ENST00000433839 588 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL139109.1-201ENST00000455491 297 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL136097.1-201ENST00000456945 913 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 RPS26P39-201ENST00000469206 341 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL132838.2-201ENST00000492041 314 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL136038.1-201ENST00000497246 351 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL137100.2-201ENST00000555786 315 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 OR7E18P-201ENST00000592589 702 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AC091903.1-201ENST00000624322 454 ntBASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.08□□□□□ -1.6
DEPDC4Q8N2C3 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 MIR937-201ENST00000401271 86 ntBASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 COX5BP7-201ENST00000414780 274 ntBASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DEPDC4Q8N2C3 AC064862.4-201ENST00000442180 334 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms